Results 31 to 40 of about 31,229 (269)

Biodiversity and functional genomics in the human microbiome [PDF]

Trends in Genetics, 2013
Over the course of our lives, humans are colonized by a tremendous diversity of commensal microbes, which comprise the human microbiome. The collective genetic potential (metagenome) of the human microbiome is orders of magnitude more than the human genome, and it profoundly affects human health and disease in ways we are only beginning to understand ...
X.C. Morgan, Segata, Nicola, C. Huttenhower   +2 more
openaire   +3 more sources

Reconciling seascape genetics and fisheries science in three codistributed flatfishes

Evolutionary Applications, 2021
Uncertainty hampers innovative mixed‐fisheries management by the scales at which connectivity dynamics are relevant to management objectives. The spatial scale of sustainable stock management is species‐specific and depends on ecology, life history and ...
Sara Vandamme, Joost A. M. Raeymaekers, Gregory E. Maes, Karl Cottenie, Federico C. F. Calboli, Eveline Diopere, Filip A. M. Volckaert   +6 more
doaj   +1 more source

The BioGenome Portal: a web-based platform for biodiversity genomics data management. [PDF]

NAR Genom Bioinform
Biodiversity genomics projects are underway with the aim of sequencing the genomes of all eukaryotic species on Earth. Here we describe the BioGenome Portal, a web-based application to facilitate organization and access to the data produced by ...
Righi E, Guigó R.
europepmc   +2 more sources

Metabarcoding arthropods in agroecosystems in Southern Ontario, Canada [PDF]

Biodiversity Data Journal
Metabarcoding can generate large numbers of georeferenced occurrence data from bulk samples at low cost. Its integration into the practice of agricultural invertebrate biomonitoring currently lacks both standard methods and example datasets that allow ...
Dirk Steinke, Kate Perez, Sean Prosser, Jayme Sones, Jireh Agda, Stephanie deWaard, Jeremy deWaard, Evgeny Zakharov, Sujeevan Ratnasingham, Paul Hebert, John Fryxell   +10 more
doaj   +3 more sources

Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies [PDF]

, 2014
The study of biodiversity spans many disciplines and includes data pertaining to species distributions and abundances, genetic sequences, traitmeasurements, and ecological niches, complemented by information on collection and measurement protocols.
Midford, Peter E., Éamonn Ó Tuama, Barry Smith, Robert Guralnick (335882), Matsunaga, Andre´a Matsunaga, Pier Luigi Buttigieg (205582), Alyssa Janning, Ra G, Norman Morrison, Steve Baskauf (529667), Ramona L. Walls, Endresen, Dag, John Deck, Neil Davies (20737), Mark Schildhauer (5658028), Tuama, Éamonn Ó., , Norman, Maria Alej, Éamonn O ́ Tuama, Dag Endresen (529670), Leonard Krishtalka (529673), Leonard Krishtalka, Endresen, Dag Terje Filip, Reed Beaman (379616), John Wooley (197694), John Wieczorek, Brian J. Stucky, Endressen, Dag, Mark Schildhauer, John Wieczorek (335880), Matsunaga, Andréa, Blum, Stanley, Davis, Neil, Midford, Peter, Ramona L. Walls (529665), Stanley Blum (529668), Reed Beaman, Maria Alejandra Gandolfo, Schildhauer, Mark, Shawn Bowers (529669), Norman Morrison (339037), Éamonn Ó. Tuama (529674), Walls, Ramona L., Stucky, Brian J., Pier Luigi Buttigieg, Robert Guralnick, Krishtalka, Leonard, Wooley, John, Brian J Stucky, Robert Hanner (183050), Andrea Thomer (455539), Dag Endresen, John Wooley, Smith, Barry, Bowers, Shawn, Andréa Matsunaga (5658022), Stanley Blum, Morrison, Norman, Bajic, Vladimir B., Hanner, Robert, Wieczorek, John, John Deck (529666), Barry Smith (39594), Blum, Stan, Jamie Whitacre (529676), Beaman, Reed, Janning, Alyssa, Peter Midford (5658025), Brian J. Stucky (529675), Deck, John, Andrea Thomer, Guralnick, Robert, Gandolfo, Maria Alejandra, Ó Tuama, Éamonn, Davies, Neil, Andréa Matsunaga, Peter Midford, Robert Hanner, Ramona L Walls, Steve Baskauf, Neil Davies, Thomer, Andrea, Alyssa Janning (529672), Shawn Bowers, Gandolfo, Maria Alejandro, Whitacre, Jamie, Jamie Whitacre, Guralnick, Robert P., Wooley, John C., Baskauf, Steve, Maria Alejandra Gandolfo (529671), Buttigieg, Pier Luigi   +91 more
core   +1 more source

A Sequel to Sanger: amplicon sequencing that scales

BMC Genomics, 2018
Background Although high-throughput sequencers (HTS) have largely displaced their Sanger counterparts, the short read lengths and high error rates of most platforms constrain their utility for amplicon sequencing.
Paul D. N. Hebert, Thomas W. A. Braukmann, Sean W. J. Prosser, Sujeevan Ratnasingham, Jeremy R. deWaard, Natalia V. Ivanova, Daniel H. Janzen, Winnie Hallwachs, Suresh Naik, Jayme E. Sones, Evgeny V. Zakharov   +10 more
doaj   +1 more source

Indigenous peoples and local communities as partners in the sequencing of global eukaryotic biodiversity

npj Biodiversity, 2023
The aim to sequence, catalog, and characterize the genomes of all of Earth’s eukaryotic biodiversity is the shared mission of many ongoing large-scale biodiversity genomics initiatives.
Ann. M. Mc Cartney, M. A. Head, K. S. Tsosie, B. Sterner, J. R. Glass, S. Paez, J. Geary, M. Hudson   +7 more
doaj   +1 more source

Genomic Approaches in Marine Biodiversity and Aquaculture [PDF]

Biological Research, 2013
Recent advances in genomic and post-genomic technologies have now established the new standard in medical and biotechnological research. The introduction of next-generation sequencing, NGS,has resulted in the generation of thousands of genomes from all domains of life, including the genomes of complex uncultured microbial communities revealed through ...
Huete-Pérez, Jorge A, Quezada, Fernando
openaire   +4 more sources

A low-cost, scalable solution for automated cutting of entomological labels [PDF]

Natural History Collections and Museomics
The digitization and labelling of historic and new specimens is a time-consuming, error-prone process as labels are still often hand-cut. To improve efficiency and consistency, we developed a low-cost solution for high-throughput environments which ...
Jayme Sones, Marlee-Ann Lyle, Isaiah Dowling, Allison Brown, Paul D. N. Hebert   +4 more
doaj   +3 more sources

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. [PDF]

NPJ Biodivers, 2023
Abstract A genomic database of all Earth’s eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth BioGenome Project (EBP), aiming to produce a database of high-quality reference genomes ...
Mc Cartney AM, Formenti G, Mouton A, De Panis D, Marins LS, Leitão HG, Diedericks G, Kirangwa J, Morselli M, Salces-Ortiz J, Escudero N, Iannucci A, Natali C, Svardal H, Fernández R, De Pooter T, Joris G, Strazisar M, Wood JMD, Herron KE, Seehausen O, Watts PC, Shaw F, Davey RP, Minotto A, Fernández JM, Böhne A, Alegria C, Alioto T, Alves PC, Amorim IR, Aury JM, Backstrom N, Baldrian P, Baltrunaite L, Barta E, BedHom B, Belser C, Bergsten J, Bertrand L, Bilandija H, Binzer-Panchal M, Bista I, Blaxter M, Borges PAV, Dias GB, Bosse M, Brown T, Bruggmann R, Buena-Atienza E, Burgin J, Buzan E, Cariani A, Casadei N, Chiara M, Chozas S, Čiampor F, Crottini A, Cruaud C, Cruz F, Dalen L, De Biase A, Del Campo J, Delic T, Dennis AB, Derks MFL, Diroma MA, Djan M, Duprat S, Eleftheriadi K, Feulner PGD, Flot JF, Forni G, Fosso B, Fournier P, Fournier-Chambrillon C, Gabaldon T, Garg S, Gissi C, Giupponi L, Gomez-Garrido J, González J, Grilo ML, Grüning B, Guerin T, Guiglielmoni N, Gut M, Haesler MP, Hahn C, Halpern B, Harrison PW, Heintz J, Hindrikson M, Höglund J, Howe K, Hughes GM, Istace B, Cock MJ, Janžekovič F, Jonsson ZO, Joye-Dind S, Koskimäki JJ, Krystufek B, Kubacka J, Kuhl H, Kusza S, Labadie K, Lähteenaro M, Lantz H, Lavrinienko A, Leclère L, Lopes RJ, Madsen O, Magdelenat G, Magoga G, Manousaki T, Mappes T, Marques JP, Redondo GIM, Maumus F, McCarthy SA, Megens HJ, Melo-Ferreira J, Mendes SL, Montagna M, Moreno J, Mosbech MB, Moura M, Musilova Z, Myers E, Nash WJ, Nater A, Nicholson P, Niell M, Nijland R, Noel B, Noren K, Oliveira PH, Olsen RA, Ometto L, Oomen RA, Ossowski S, Palinauskas V, Palsson S, Panibe JP, Pauperio J, Pavlek M, Payen E, Pawlowska J, Pellicer J, Pesole G, Pimenta J, Pippel M, Pirttilä AM, Poulakakis N, Rajan J, M C Rego R, Resendes R, Resl P, Riesgo A, Rodin-Morch P, Soares AER, Fernandes CR, Romeiras MM, Roxo G, Rüber L, Ruiz-Lopez MJ, Saarma U, da Silva LP, Sim-Sim M, Soler L, Sousa VC, Santos CS, Spada A, Stefanovic M, Steger V, Stiller J, Stöck M, Struck TH, Sudasinghe H, Tapanainen R, Tellgren-Roth C, Trindade H, Tukalenko Y, Urso I, Vacherie B, Van Belleghem SM, Van Oers K, Vargas-Chavez C, Velickovic N, Vella N, Vella A, Vernesi C, Vicente S, Villa S, Pettersson OV, Volckaert FAM, Voros J, Wincker P, Winkler S, Ciofi C, Waterhouse RM, Mazzoni CJ.   +202 more
europepmc   +35 more sources