Results 51 to 60 of about 760,928 (287)

Ontology Learning from Text: An Overview [PDF]

, 2005
Buitelaar P, Cimiano P, Magnini B. Ontology Learning from Text: An Overview. In: Buitelaar P, Cimiano P, Magnini B, eds. Ontology Learning from Text: Methods, Evaluation and Applications. Frontiers in Artificial Intelligence and Applications.
Buitelaar, P., Cimiano, P., Buitelaar, Paul, Magnini, Bernardo, Cimiano, Philipp ; https://orcid.org/, Magnini, B.   +5 more
core   +1 more source

Oncogenic DMTF1β promotes cancer cell motility by regulating autophagy through ULK1 stabilization

Molecular Oncology, EarlyView.
In the current study, we demonstrate that the oncogene DMTF1β regulates ULK1 stability by reducing its proteasomal degradation in cancer cells. This stabilization enables ULK1 to induce autophagy, which in turn facilitates cancer cell migration. Consequently, reduced DMTF1β levels lead to decreased autophagy and impaired cancer cell migration.
Jun Xu, Nicolas J. Niklaus, Anna M. Schläfli, Igor Tokarchuk, Magali Humbert, Federico La Manna, Bich Vu, David Maul, Ramin Radpour, Marianna Kruithof‐de Julio, Inti Zlobec, Jörn Dengjel, Bruce E. Torbett, Mario P. Tschan   +13 more
wiley   +1 more source

Concept annotation in the CRAFT corpus

BMC Bioinformatics, 2012
Background Manually annotated corpora are critical for the training and evaluation of automated methods to identify concepts in biomedical text. Results This paper presents the concept annotations of the Colorado Richly Annotated Full-Text (CRAFT) Corpus,
Bada Michael, Eckert Miriam, Evans Donald, Garcia Kristin, Shipley Krista, Sitnikov Dmitry, Baumgartner William A, Cohen K, Verspoor Karin, Blake Judith A, Hunter Lawrence E   +10 more
doaj   +1 more source

Profiling neoadjuvant therapy response in rectal cancer using meta‐analysis of publicly available transcriptomic RNA‐seq datasets

Molecular Oncology, EarlyView.
This study integrates publicly available transcriptomic datasets to identify molecular signatures associated with response to neoadjuvant chemoradiotherapy in locally advanced rectal cancer. By analyzing a combination of multiple cohorts with bioinformatics approaches, we reveal biological pathways and immune‐related features that may improve ...
Aleksandra Stanojevic, Rafael Stroggilos, Mladen Marinkovic, Ana Djuric, Suzana Stojanovic‐Rundic, Radmila Jankovic, Sergi Castellvi‐Bel, Remond J.A. Fijneman, Antonia Vlahou, Jerome Zoidakis, Milena Cavic   +10 more
wiley   +1 more source

Pathways and pitfalls: a qualitative study of student experiences in biomedical science education

FEBS Open Bio, EarlyView.
Biomedical science students from underrepresented backgrounds face barriers including financial strain, disrupted laboratory access and cultural exclusion. Peer networks provide vital support when institutional systems are difficult to navigate. To create inclusive learning environments and achieve academic success, educators should blend active, hands‐
Olivia J. Russell, Cassy Ross, Panagiota S. Filippou, Bruno Silvester Lopes, Dominic Gilchrist, Paul Dean, Kamar Ameen‐Ali, Tora K. Smulders‐Srinivasan, Ahmad A. Khundakar   +8 more
wiley   +1 more source

Searching Ontologies Based on Content: Experiments in the Biomedical Domain [PDF]

, 2007
As more ontologies become publicly available, finding the "right" ontologies becomes much harder. In this paper, we address the problem of ontology search: finding a collection of ontologies from an ontology repository that are relevant to the user's ...
Noy, Natasha, Shah, Nigam, Alani, Harith, Musen, Mark, Shadbolt, Nigel   +4 more
core   +1 more source

Matching Biomedical Ontologies through Adaptive Multi-Modal Multi-Objective Evolutionary Algorithm

Biology, 2021
To integrate massive amounts of heterogeneous biomedical data in biomedical ontologies and to provide more options for clinical diagnosis, this work proposes an adaptive Multi-modal Multi-Objective Evolutionary Algorithm (aMMOEA) to match two ...
Xingsi Xue, Pei-Wei Tsai, Yucheng Zhuang
doaj   +1 more source

MagmaFlow: A desktop platform for artificial intelligence‐driven expression analysis

FEBS Open Bio, EarlyView.
MagmaFlow is a free, no‐code platform for gene expression analysis. It generates interactive volcano plots, links genes to literature, pathways, and diseases, prioritizes candidates using millions of publications, identifies affected biological processes, builds network diagrams, and exports publication‐ready figures and reports for macOS and Windows ...
Carlos E. Buss, Ao Li, Eduardo H. Gilglioni, Mayank Bansal, Sumeet Pal Singh, Latifa Bakiri, Alessandra K. Cardozo, Esteban N. Gurzov   +7 more
wiley   +1 more source

Knowledge Management for Biomedical Literature: The Function of Text-Mining Technologies in Life-Science Research [PDF]

, 2008
Efficient information retrieval and extraction is a major challenge in life-science research. The Knowledge Management (KM) for biomedical literature aims to establish an environment, utilizing information technologies, to facilitate better acquisition ...

core   +4 more sources

The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data [PDF]

, 2009
Biomedical Ontologies are intended to integrate diverse biomedical data to enable intelligent data-mining and facilitate translation of basic research into useful clinical knowledge.
Eric Westhof, Chris Mungall, Jane Richardson, Karen Eilbeck, Thomas Bittner, Colin Batchelor, Craig Zirbel, Jesse Stombaugh, Neocles Leontis, Rob Knight   +9 more
core