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Biomedical Ontologies: Toward Scientific Debate
Methods of Information in Medicine, 2011 SummaryObjectives: Biomedical ontologies have been very successful in structuring knowl edge for many different applications, receiving widespread praise for their utility and potential. Yet, the role of computational ontologies in scientific research, as opposed to knowledge management applications, has not been extensively discussed.
Maojo García, Víctor Manuel +5 more
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Natural Language Processing methods and systems for biomedical ontology learning. [PDF]
J Biomed Inform, 2011 Liu K, Hogan WR, Crowley RS.
europepmc +2 more sources
Biomedical ontologies: a functional perspective [PDF]
Briefings in Bioinformatics, 2007 The information explosion in biology makes it difficult for researchers to stay abreast of current biomedical knowledge and to make sense of the massive amounts of online information. Ontologies--specifications of the entities, their attributes and relationships among the entities in a domain of discourse--are increasingly enabling biomedical ...
Daniel L, Rubin +2 more
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Matching biomedical ontologies through compact differential evolution algorithm
Systems Science & Control Engineering, 2019 Although biomedical ontologies have been widely used in the life science domain, the heterogeneous problem among biomedical ontologies hampers their inter-operability.
Xingsi Xue, Junfeng Chen
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An Effective Method to Measure Disease Similarity Using Gene and Phenotype Associations
Frontiers in Genetics, 2019 Motivation: In order to create controlled vocabularies for shared use in different biomedical domains, a large number of biomedical ontologies such as Disease Ontology (DO) and Human Phenotype Ontology (HPO), etc., are created in the bioinformatics ...
Shuhui Su, Lei Zhang, Jian Liu
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Putting Biomedical Ontologies to Work [PDF]
European Journal for Biomedical Informatics, 2009 Summary Objectives: Biomedical ontologies exist to serve integration of clinical and experimental data, and it is critical to their success that they be put to widespread use in the annotation of data. How, then, can ontologies achieve the sort of user-friendliness, reliability, cost-effectiveness, and breadth of coverage that is necessary to
B, Smith, M, Brochhausen
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Context-based refinement of mappings in evolving life science ontologies
Journal of Biomedical Semantics, 2023 Background Biomedical computational systems benefit from ontologies and their associated mappings. Indeed, aligned ontologies in life sciences play a central role in several semantic-enabled tasks, especially in data exchange.
Victor Eiti Yamamoto +2 more
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BMC Medical Informatics and Decision Making, 2021 Background The International Classification of Functioning, Disability and Health (ICF) is a classification of health and health-related states developed by the World Health Organization (WHO) to provide a standard and unified language to be used as a ...
Silvia Cozzi +2 more
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Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge
BMC Bioinformatics, 2017 Cell cultures used in biomedical experiments come in the form of both sample biopsy primary cells, and maintainable immortalised cell lineages. The rise of bioinformatics and high-throughput technologies has led us to the requirement of ontology ...
Sirarat Sarntivijai +2 more
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A formal theory for spatial representation and reasoning in biomedical ontologies [PDF]
, 2006 Objective: The objective of this paper is to demonstrate how a formal spatial theory can be used as an important tool for disambiguating the spatial information embodied in biomedical ontologies and for enhancing their automatic reasoning capabilities ...
Bittner, Thomas +2 more
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