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WASP—A Web Application to Support Syntactically and Semantically Correct SNOMED CT Postcoordination

open access: yesApplied Sciences, 2023
Expressive clinical terminologies are of utmost importance for achieving a semantically interoperable data exchange and reuse in healthcare. SNOMED CT, widely respected as the most comprehensive terminology in medicine, provides formal concept ...
Cora Drenkhahn   +3 more
doaj   +1 more source

Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies [PDF]

open access: yes, 2014
The study of biodiversity spans many disciplines and includes data pertaining to species distributions and abundances, genetic sequences, traitmeasurements, and ecological niches, complemented by information on collection and measurement protocols.
Midford, Peter E.   +91 more
core   +1 more source

Tackling the challenges of matching biomedical ontologies

open access: yesJournal of Biomedical Semantics, 2018
Background Biomedical ontologies pose several challenges to ontology matching due both to the complexity of the biomedical domain and to the characteristics of the ontologies themselves.
Daniel Faria   +5 more
doaj   +1 more source

Ontology engineering in virtual breeding environments [PDF]

open access: yes, 2007
This paper proposes a new method for managing the use of ontologies in the context of a Virtual Breeding Environment. This research work focus is on the dissolution phase of a Virtual Enterprise or Collaborative Network, whereontology segmentation ...
Lucas Soares, António   +9 more
core   +1 more source

Completing the is-a Structure of Biomedical Ontologies

open access: yes, 2014
Ontologies in the biomedical domain are becoming a key element for data integration and search. The usefulness of the applications which use ontologies is often directly influenced by the quality of ontologies, as incorrect or incomplete ontologies might lead to wrong or incomplete results for the applications.
Zlatan Dragisic   +2 more
openaire   +3 more sources

AIMS: An Automatic Semantic Machine Learning Microservice Framework to Support Biomedical and Bioengineering Research

open access: yesBioengineering, 2023
The fusion of machine learning and biomedical research offers novel ways to understand, diagnose, and treat various health conditions. However, the complexities of biomedical data, coupled with the intricate process of developing and deploying machine ...
Hong Qing Yu   +2 more
doaj   +1 more source

Circular RNA expression landscapes in myelodysplastic neoplasms: Associations with mutational signatures and disease progression

open access: yesMolecular Oncology, EarlyView.
In this explorative study, the abundance of circular RNA molecules in bone marrow stem cells was found to be elevated in patients with high‐risk myelodysplastic neoplasms, and to be associated with an increased risk of progression to acute myeloid leukemia.
Eileen Wedge   +17 more
wiley   +1 more source

MIREOT: the Minimum Information to Reference an External Ontology Term [PDF]

open access: yes, 2009
While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have working with large ontologies, direct OWL imports have ...
Allyson Lister   +9 more
core   +1 more source

MITF maintains genome stability in nonmelanocyte lineages

open access: yesMolecular Oncology, EarlyView.
MITF is essential for melanocyte survival and acts as an oncogene in 10%–20% of melanomas. We show that MITF depletion causes genome instability in nonmelanocytic cells, leading to LATS2‐mediated P53 activation, cell cycle arrest, and apoptosis. This study highlights the role of MITF as a genome maintenance factor beyond the melanocyte lineage. Created
Drifa H. Gudmundsdottir   +13 more
wiley   +1 more source

Evolution of biomedical ontologies and mappings: Overview of recent approaches

open access: yesComputational and Structural Biotechnology Journal, 2016
Biomedical ontologies are heavily used to annotate data, and different ontologies are often interlinked by ontology mappings. These ontology-based mappings and annotations are used in many applications and analysis tasks.
Anika Groß, Cédric Pruski, Erhard Rahm
doaj   +1 more source

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