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Putting Biomedical Ontologies to Work [PDF]
European Journal for Biomedical Informatics, 2009 Summary Objectives: Biomedical ontologies exist to serve integration of clinical and experimental data, and it is critical to their success that they be put to widespread use in the annotation of data. How, then, can ontologies achieve the sort of user-friendliness, reliability, cost-effectiveness, and breadth of coverage that is necessary to
B, Smith, M, Brochhausen
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Context-based refinement of mappings in evolving life science ontologies
Journal of Biomedical Semantics, 2023 Background Biomedical computational systems benefit from ontologies and their associated mappings. Indeed, aligned ontologies in life sciences play a central role in several semantic-enabled tasks, especially in data exchange.
Victor Eiti Yamamoto +2 more
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Semantic Similarity in Biomedical Ontologies
PLoS Computational Biology, 2009 In recent years, ontologies have become a mainstream topic in biomedical research. When biological entities are described using a common schema, such as an ontology, they can be compared by means of their annotations. This type of comparison is called semantic similarity, since it assesses the degree of relatedness between two entities by the ...
Catia Pesquita +4 more
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Gene Ontology (GO) Annotation in Biomedical Literature [PDF]
, 2008 In this paper, we propose an approach for doing Gene Ontology (GO) annotation on biomedical texts. The GO is an effort to create a controlled terminology for labelling gene functions in a more precise.
Gálvez, Carmen
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BMC Medical Informatics and Decision Making, 2021 Background The International Classification of Functioning, Disability and Health (ICF) is a classification of health and health-related states developed by the World Health Organization (WHO) to provide a standard and unified language to be used as a ...
Silvia Cozzi +2 more
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Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge
BMC Bioinformatics, 2017 Cell cultures used in biomedical experiments come in the form of both sample biopsy primary cells, and maintainable immortalised cell lineages. The rise of bioinformatics and high-throughput technologies has led us to the requirement of ontology ...
Sirarat Sarntivijai +2 more
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Ontology-Based MEDLINE Document Classification [PDF]
, 2007 An increasing and overwhelming amount of biomedical information is available in the research literature mainly in the form of free-text. Biologists need tools that automate their information search and deal with the high volume and ambiguity of free-text.
Fabrice Camous +5 more
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Ontology-based document representation for biomedical information retrieval [PDF]
, 2007 In the current era of fast sequencing of entire genomes, more data is becoming available for analysis. This data analysis, in turn, leads to an increasing amount of scientfic publications.
Camous, Fabrice
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Debugging Mappings between Biomedical Ontologies: Preliminary Results from the NCBO BioPortal Mapping Repository [PDF]
, 2009 The ability to provide semantic mappings between multiple large biomedical ontologies is considered as a very important, albeit labor-intensive and error-prone task.
Jyotishman Pathak, Christopher Chute
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Biomedical ontologies: a functional perspective [PDF]
Briefings in Bioinformatics, 2007 The information explosion in biology makes it difficult for researchers to stay abreast of current biomedical knowledge and to make sense of the massive amounts of online information. Ontologies--specifications of the entities, their attributes and relationships among the entities in a domain of discourse--are increasingly enabling biomedical ...
Daniel L. Rubin +2 more
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