Results 11 to 20 of about 123,356 (289)

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation [PDF]

Journal of Biomedical Semantics, 2017
Background Ontologies and controlled terminologies have become increasingly important in biomedical research. Researchers use ontologies to annotate their data with ontology terms, enabling better data integration and interoperability across disparate ...
Marcos Martínez-Romero, Clement Jonquet, Martin J. O’Connor, John Graybeal, Alejandro Pazos, Mark A. Musen   +5 more
doaj   +11 more sources

Interactive biomedical ontology matching. [PDF]

PLoS ONE, 2019
Due to continuous evolution of biomedical data, biomedical ontologies are becoming larger and more complex, which leads to the existence of many overlapping information.
Xingsi Xue, Zhi Hang, Zhengyi Tang
doaj   +4 more sources

UFO: A tool for unifying biomedical ontology-based semantic similarity calculation, enrichment analysis and visualization. [PDF]

PLoS ONE, 2020
BackgroundBiomedical ontologies have been growing quickly and proven to be useful in many biomedical applications. Important applications of those data include estimating the functional similarity between ontology terms and between annotated biomedical ...
Duc-Hau Le
doaj   +2 more sources

Mechanisms in biomedical ontology. [PDF]

J Biomed Semantics, 2012
The concept of a mechanism has become a standard proposal for explanations in biology. It has been claimed that mechanistic explanations are appropriate for systems biology, because they occupy a middle ground between strict reductionism and holism. Because of their importance in the field a formal ontological description of mechanisms is desirable ...
Röhl J.
europepmc   +4 more sources

Linked open data-based framework for automatic biomedical ontology generation [PDF]

BMC Bioinformatics, 2018
Background Fulfilling the vision of Semantic Web requires an accurate data model for organizing knowledge and sharing common understanding of the domain.
Mazen Alobaidi, Khalid Mahmood Malik, Susan Sabra   +2 more
doaj   +2 more sources

The Ontology for Biomedical Investigations. [PDF]

PLoS ONE, 2016
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted.
Anita Bandrowski, Ryan Brinkman, Mathias Brochhausen, Matthew H Brush, Bill Bug, Marcus C Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Frank Gibson, Alejandra Gonzalez-Beltran, Melissa A Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez-Boussard, Mark Jensen, Yu Lin, Allyson L Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A Overton, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Daniel Schober, Barry Smith, Larisa N Soldatova, Christian J Stoeckert, Chris F Taylor, Carlo Torniai, Jessica A Turner, Randi Vita, Patricia L Whetzel, Jie Zheng   +43 more
doaj   +6 more sources

Biomedical ontology alignment: an approach based on representation learning. [PDF]

J Biomed Semantics, 2018
While representation learning techniques have shown great promise in application to a number of different NLP tasks, they have had little impact on the problem of ontology matching.
Kolyvakis P, Kalousis A, Smith B, Kiritsis D.   +3 more
europepmc   +3 more sources

Search-optimized quantization in biomedical ontology alignment [PDF]

Frontiers in Artificial Intelligence
In the fast-moving world of AI, as organizations and researchers develop more advanced models, they face challenges due to their sheer size and computational demands.
Oussama Bouaggad, Oussama Bouaggad, Natalia Grabar   +2 more
doaj   +2 more sources

Using NSGA-III for optimising biomedical ontology alignment

CAAI Transactions on Intelligence Technology, 2019
To support semantic inter-operability between the biomedical information systems, it is necessary to determine the correspondences between the heterogeneous biomedical concepts, which is commonly known as biomedical ontology matching. Biomedical concepts
Xingsi Xue, Jiawei Lu, Jiawei Lu, Junfeng Chen   +3 more
doaj   +3 more sources

Ontology for Biomedical Investigations [PDF]

Nature Precedings, 2009
The goal of OBI is to enable a formal representation of biomedical investigations that captures the experimental evidence on which their findings are based. The scope of OBI includes: materials made in and produced for investigations, research objectives,
Bjoern Peters, The OBI Consortium
core   +3 more sources