Results 21 to 30 of about 123,356 (289)

Exploring biomedical ontology mappings with graph theory methods [PDF]

PeerJ, 2017
Background In the era of semantic web, life science ontologies play an important role in tasks such as annotating biological objects, linking relevant data pieces, and verifying data consistency.
Simon Kocbek, Jin-Dong Kim
doaj   +3 more sources

The National Center for Biomedical Ontology. [PDF]

J Am Med Inform Assoc, 2012
The National Center for Biomedical Ontology is now in its seventh year. The goals of this National Center for Biomedical Computing are to: create and maintain a repository of biomedical ontologies and terminologies; build tools and web services to enable the use of ontologies and terminologies in clinical and translational research; educate their ...
Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B, NCBO team.   +7 more
europepmc   +4 more sources

Predicting the extension of biomedical ontologies. [PDF]

PLoS Computational Biology, 2012
Developing and extending a biomedical ontology is a very demanding task that can never be considered complete given our ever-evolving understanding of the life sciences.
Catia Pesquita, Francisco M Couto
doaj   +4 more sources

Large Language Models in Bio-Ontology Research: A Review [PDF]

Bioengineering
Biomedical ontologies are critical for structuring domain knowledge and enabling integrative analyses in the life sciences. Traditional ontology development is labor-intensive, requiring extensive expert curation.
Prashanti Manda
doaj   +2 more sources

Methods in biomedical ontology

Journal of Biomedical Informatics, 2006
Research on ontologies is becoming widespread in the biomedical informatics community. At the same time, it has become apparent that the challenges of properly constructing and maintaining ontologies have proven more difficult than many workers in the field initially expected. Discovering general, feasible methods has thus become a central activity for
openaire   +4 more sources

Representing dental restoration materials in the oral health and disease ontology [PDF]

Journal of Biomedical Semantics
Background Semantic clarity and standardization in representing dental restoration materials are essential for ensuring interoperability across research and clinical settings.
Nivedita Dutta, Michael DeBellis, Nripen Chanda, Alexander D. Diehl, Finn Wilson, Mateus Rocha, Mattew Diller, Gopikrishnan M. Chandrasekharan, William D. Duncan   +8 more
doaj   +2 more sources

Building a biomedical ontology recommender web service [PDF]

Journal of Biomedical Semantics, 2010
Background Researchers in biomedical informatics use ontologies and terminologies to annotate their data in order to facilitate data integration and translational discoveries.
Jonquet Clement, Musen Mark A, Shah Nigam H   +2 more
doaj   +2 more sources

Optimizing large language models for ontology-based annotation: a study on gene ontology in biomedical texts [PDF]

BioData Mining
Automated ontology annotation of scientific literature plays a critical role in knowledge management, particularly in fields like biology and biomedicine, where accurate concept tagging can enhance information retrieval, semantic search, and knowledge ...
Pratik Devkota, Somya D. Mohanty, Prashanti Manda   +2 more
doaj   +2 more sources

Assessing the practice of biomedical ontology evaluation: Gaps and opportunities. [PDF]

J Biomed Inform, 2018
Amith M, He Z, Bian J, Lossio-Ventura JA, Tao C.   +4 more
europepmc   +2 more sources

National Center for Biomedical Ontology: Advancing biomedicine through structured organization of scientific knowledge [PDF]

, 2006
The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow
Chute, Christopher G., Lewis, Suzanna E., Michael, Ashburner, Monte, Westerfield, Mungall, Chris J., Musen, Mark A., Noy, Natasha, Richter, John D., Rubin, Daniel L., Sim, Ida, Sima, Misra, Smith, Barry, Solbrig, Harold, Storey, M. A.   +13 more
core   +9 more sources