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Lessons from the rifamycin biosynthetic gene cluster

Current Opinion in Chemical Biology, 1999
There is currently intense interest in unravelling the modus operandi of type I modular polyketide synthases in order to lay the ground work for their use in the combinatorial biosynthesis of new bioactive molecules. Much of our knowledge is derived from studies on 6-deoxyerythronolide B (DEBS), the enzyme assembling the polyketide backbone of ...
H G, Floss, T W, Yu
openaire   +2 more sources

Cloning and Sequencing of the Chaetocin Biosynthetic Gene Cluster

ChemBioChem, 2013
How a fungus does it: The epidithiodiketopiperazine (ETP) fungal alkaloids, which include gliotoxin, have garnered much attention since their initial isolation. The cloning and sequencing of the biosynthetic gene cluster for another ETP, chaetocin A were used to suggest a route towards dimerization and sulfur incorporation in these molecules.
Thomas, Gerken, Christopher T, Walsh
openaire   +2 more sources

Biosynthetic Gene Clusters in Bacteria: A Review

Proceedings of the Pakistan Academy of Sciences: B. Life and Environmental Sciences, 2022
Soil is a nutrient-rich environment that harbors billions of microbial species. The diversity of microbes in an environment varies with the change in edaphic factors. To survive these environmental changes, microbes produce secondary metabolites which are not directly associated with their growth and reproduction. Bacterial genomes possess biosynthetic
Rimsha Dilshad, Nazia Jamil, Rida Batool
openaire   +1 more source

A Bioinformatics Workflow for Investigating Fungal Biosynthetic Gene Clusters

2022
Predicting secondary metabolite biosynthetic gene clusters is a routine analysis performed for each newly sequenced fungal genome. Yet, the usefulness of such predictions remains restricted as they provide total numbers of biosynthetic pathways with only very limited biological significance.
Collemare, J., Navarro-Munoz, J.C.
openaire   +3 more sources

Ergot alkaloids: structure diversity, biosynthetic gene clusters and functional proof of biosynthetic genes

Nat. Prod. Rep., 2011
Ergot alkaloids are toxins and important pharmaceuticals which are produced biotechnologically on an industrial scale. They have been identified in two orders of fungi and three families of higher plants. The most important producers are fungi of the genera Claviceps, Penicillium and Aspergillus (all belonging to the Ascomycota).
Christiane, Wallwey, Shu-Ming, Li
openaire   +2 more sources

Characterization of the secondary metabolite biosynthetic gene clusters in archaea

Computational Biology and Chemistry, 2019
Secondary metabolites are a range of bioactive compounds yielded by bacteria, fungi and plants, etc. The published archaea genomic data provide the opportunity for efficient identification of secondary metabolite biosynthetic gene clusters (BGCs) by genome mining. However, the study of secondary metabolites in archaea is still rare.
Shengqin Wang   +4 more
openaire   +3 more sources

Advances in mining and expressing microbial biosynthetic gene clusters

Critical Reviews in Microbiology, 2023
Zeling Xu, Huiluo Cao
exaly  

In silico genome mining of potential novel biosynthetic gene clusters for drug discovery from Burkholderia bacteria

Computers in Biology and Medicine, 2022
Muhammad Nazeer Abbasi   +2 more
exaly  

Mini review: Genome mining approaches for the identification of secondary metabolite biosynthetic gene clusters in Streptomyces

Computational and Structural Biotechnology Journal, 2020
Suhyung Cho   +2 more
exaly  

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