Results 41 to 50 of about 106,502 (281)

A continuous-time stochastic Boolean model provides a quantitative description of the budding yeast cell cycle

open access: yesScientific Reports, 2022
The cell division cycle is regulated by a complex network of interacting genes and proteins. The control system has been modeled in many ways, from qualitative Boolean switching-networks to quantitative differential equations and highly detailed ...
Teeraphan Laomettachit   +2 more
doaj   +1 more source

Optimal control for probabilistic Boolean networks

open access: yesIET Systems Biology, 2010
Aberrant gene functions usually contribute to the pathology or diseases. Avoiding undesirable cellular phenotypes as many as possible is a major purpose of external control for gene regulatory networks. An interesting question is how to control a gene network subjected to the condition that the genes reach some undesirable states with minimal ...
Q, Liu, X, Guo, T, Zhou
openaire   +2 more sources

Symmetry in Critical Random Boolean Network Dynamics

open access: yes, 2014
Using Boolean networks as prototypical examples, the role of symmetry in the dynamics of heterogeneous complex systems is explored. We show that symmetry of the dynamics, especially in critical states, is a controlling feature that can be used both to ...
Bassler, Kevin E.   +2 more
core   +1 more source

Event-Triggered Control for the Stabilization of Probabilistic Boolean Control Networks

open access: yesComplexity, 2018
This paper realizes global stabilization for probabilistic Boolean control networks (PBCNs) with event-triggered state feedback control (ETSFC). Via the semitensor product (STP) of matrices, PBCNs with ETSFC are converted into discrete-time algebraic ...
Shiyong Zhu   +4 more
doaj   +1 more source

Chaos control in random Boolean networks by reducing mean damage percolation rate

open access: yes, 2010
Chaos control in Random Boolean networks is implemented by freezing part of the network to drive it from chaotic to ordered phase. However, controlled nodes are only viewed as passive blocks to prevent perturbation spread.
Gershenson C   +7 more
core   +1 more source

The number and probability of canalizing functions

open access: yes, 2003
Canalizing functions have important applications in physics and biology. For example, they represent a mechanism capable of stabilizing chaotic behavior in Boolean network models of discrete dynamical systems.
Aldana   +20 more
core   +1 more source

Double Deep-Q Learning-Based Output Tracking of Probabilistic Boolean Control Networks

open access: yesIEEE Access, 2020
In this article, a reinforcement learning (RL)-based scalable technique is presented to control the probabilistic Boolean control networks (PBCNs). In particular, a double deep- $Q$ network (DD $Q\text{N}$ ) approach is firstly proposed to address the ...
Antonio Acernese   +3 more
doaj   +1 more source

Time-delayed models of gene regulatory networks [PDF]

open access: yes, 2015
We discuss different mathematical models of gene regulatory networks as relevant to the onset and development of cancer. After discussion of alternativemodelling approaches, we use a paradigmatic two-gene network to focus on the role played by time ...
Blyuss, K B   +3 more
core   +4 more sources

Boolean Feedforward Neural Network Modeling of Molecular Regulatory Networks for Cellular State Conversion

open access: yesFrontiers in Physiology, 2020
The molecular regulatory network (MRN) within a cell determines cellular states and transitions between them. Thus, modeling of MRNs is crucial, but this usually requires extensive analysis of time-series measurements, which is extremely difficult to ...
Sang-Mok Choo   +2 more
doaj   +1 more source

Algorithms for leader selection in stochastically forced consensus networks

open access: yes, 2013
We are interested in assigning a pre-specified number of nodes as leaders in order to minimize the mean-square deviation from consensus in stochastically forced networks.
Fardad, Makan   +2 more
core   +1 more source

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