Results 91 to 100 of about 12,625 (251)

Functional annotation of rhizospheric phageome of the wild plant species Moringa oleifera

Frontiers in Microbiology, 2023
IntroductionThe study aims to describe phageome of soil rhizosphere of M.oleifera in terms of the genes encoding CAZymes and other KEGG enzymes.MethodsGenes of the rhizospheric virome of the wild plant species Moringa oleifera were investigated for their
Ruba A. Ashy, Rewaa S. Jalal, Hana S. Sonbol, Mashael D. Alqahtani, Fatmah O. Sefrji, Sahar A. Alshareef, Fatimah M. Alshehrei, Haneen W. Abuauf, Lina Baz, Manal A. Tashkandi, Israa J. Hakeem, Mohammed Y. Refai, Aala A. Abulfaraj   +12 more
doaj   +1 more source

Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes. [PDF]

, 2018
Fungi play a key role cycling nutrients in forest ecosystems, but the mechanisms remain uncertain. To clarify the enzymatic processes involved in wood decomposition, the metatranscriptomics and metaproteomics of extensively decayed lodgepole pine were ...
Barry, Kerrie, Bhatnagar, Jennifer M, Cullen, Dan, Fauchery, Laure, Gaskell, Jill, Grigoriev, Igor V, Hori, Chiaki, Kohler, Annegret, Lail, Kathleen, Martin, Francis, Peng, Yi, Sabat, Grzegorz, Stewart, Philip E, Zeiner, Carolyn A   +13 more
core  

Lytic polysaccharide monooxygenases and other oxidative enzymes are abundantly secreted by Aspergillus nidulans grown on different starches [PDF]

, 2016
Additional file 5: Tables S3–S5. Table S3. Top 20 detected proteins in the secretome of Aspergillus nidulans during growth on wheat starch at day 3, 4 and 5. Table S4.
Birte Svensson, Gustav Vaaje-Kolstad, Laura Nekiunaite, Magnus Ø. Arntzen, Maher Abou Hachem   +4 more
core   +7 more sources

Exploring the Roles of Tuna‐Associated Acinetobacter sp. YFT067: Implications for Host Health and Metabolism

Animal Research and One Health, EarlyView.
This study firstly isolated a tuna‐derived gut probiotic Acinetobacter seifertii YFT067. Dietary administration of YFT067 played significant roles in promoting growth performance, SCFAs production, lipid absorption, and metabolism of the host, indicating YFT067 as a promising probiotic candidate for enhancing tuna aquaculture productivity through ...
Ying Zou, Hai Huang, Qiongyao Fu, Zhiyuan Lu, Zhiqiang Guo   +4 more
wiley   +1 more source

Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae [PDF]

, 2018
A reference-quality assembly of Fusarium oxysporum f. sp. cepae (Foc), the causative agent of onion basal rot has been generated along with genomes of additional pathogenic and non-pathogenic isolates of onion.
A Bankevich, A Gurevich, A Krogh, A Taylor, A Taylor, AC Testa, AH Williams, AL Delcher, AR Quinlan, B Gel, B Langmead, B Ramos, BJ Haas, BJ Walker, BV Chellapan, C Camacho, C Cramer, C Trapnell, CB Michielse, D Brayford, D Medini, F Gawehns, FA Simão, GH Teetor-Barsch, H Bayraktar, HC Does van der, I Vlaardingerbroek, J Mistry, J Niño-Sánchez, J Sperschneider, K Katoh, K Sasaki, K Tamura, KJ Hoff, L Epstein, L Faino, L Li, L Ma, L-J Ma, M Stanke, MJ Southwood, MJ Southwood, NH Barton, P Dam van, P Jones, PJ Kersey, PM Houterman, PM Houterman, R Apweiler, R Lanfear, RP Baayen, RP Brown, S Aimé, S Dong, S-Y Jiang, SM Schmidt, SM Schmidt, T Weber, TN Petersen, V Lombard, VGAA Vleeshouwers   +60 more
core   +3 more sources

A Metagenome‐Assembled Genome Catalog From the Global Ruminant Microbiomes

Animal Research and One Health, EarlyView.
The Ruminant Gastrointestinal MAG Catalog (RGMC) is a comprehensive global resource offering 40,812 strain‐level genomes across 53 bacterial and 4 archaeal classes. It greatly surpasses prior efforts in scale and diversity, serving as an essential foundation for research in ruminant nutrition, microbial function, and methane mitigation.
Shizhe Zhang, Qiushuang Li, Bingzi Ouyang, Wenxing Wang, Xiang Zhou, Xiumin Zhang, Rong Wang, Zhiliang Tan, Min Wang   +8 more
wiley   +1 more source

dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation [PDF]

Nucleic Acids Research, 2017
Carbohydrate-active enzyme (CAZymes) are not only the most important enzymes for bioenergy and agricultural industries, but also very important for human health, in that human gut microbiota encode hundreds of CAZyme genes in their genomes for degrading various dietary and host carbohydrates.
Huang, Le, Zhang, Han, Wu, Peizhi, Entwistle, Sarah, Li, Xueqiong, Yohe, Tanner, Yi, Haidong, Yang, Zhenglu, Yin, Yanbin   +8 more
openaire   +2 more sources

Specialized Bacteroidetes dominate the Arctic Ocean during marine spring blooms

Frontiers in Microbiology
A metagenomic time series from Arctic seawater was obtained from Dease Strait, to analyse the changes in bacterioplankton caused by the summer phytoplankton bloom.
Álvaro Redondo-Río, Christopher J. Mundy, Javier Tamames, Carlos Pedrós-Alió   +3 more
doaj   +1 more source

Seasonal drivers of plant–soil–microbial community structure and functions in Western Himalayan grasslands, Pakistan

Grassland Research, EarlyView.
Plant species richness was greater in summer in both alpine and subalpine grassland ecosystems. Soil moisture demonstrates significant positive correlations with soil organic carbon and total nitrogen across seasonal periods. Microbial α‐diversity peaks during summer but maintains functional stability across seasons.
Huma Ali, Muhammad Rafiq, Allan Degen, Ben Sparrow, Zhanhuan Shang   +4 more
wiley   +1 more source

Unveiling the Arsenal of Apple Bitter Rot Fungi: Comparative Genomics Identifies Candidate Effectors, CAZymes, and Biosynthetic Gene Clusters in Colletotrichum Species

Journal of Fungi
The bitter rot of apple is caused by Colletotrichum spp. and is a serious pre-harvest disease that can manifest in postharvest losses on harvested fruit. In this study, we obtained genome sequences from four different species, C.
F. Khodadadi, Dianiris Luciano-Rosario, Christopher Gottschalk, W. Jurick, S. Aćimović   +4 more
semanticscholar   +1 more source