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Including the Magnitude Variability of a Signal in the Ordinal Pattern Analysis [PDF]

open access: yesEntropy
One of the most popular and innovative methods to analyse signals is by using Ordinal Patterns (OPs). The OP encoding is based on transforming a (univariate) signal into a symbolic sequence of OPs, where each OP represents the number of permutations ...
Melvyn Tyloo   +2 more
doaj   +2 more sources

A signature-agnostic test for differences between tumor mutation spectra reveals carcinogen and ancestry effects [PDF]

open access: yesCommunications Biology
Despite dozens of tools to identify mutational signatures in cancer samples, there is not an established metric for quantifying whether signature exposures differ significantly between two heterogeneous groups of samples.
Samuel F. M. Hart   +3 more
doaj   +2 more sources

Circularly permuted variants of two CG-specific prokaryotic DNA methyltransferases. [PDF]

open access: yesPLoS ONE, 2018
The highly similar prokaryotic DNA (cytosine-5) methyltransferases (C5-MTases) M.MpeI and M.SssI share the specificity of eukaryotic C5-MTases (5'-CG), and can be useful research tools in the study of eukaryotic DNA methylation and epigenetic regulation.
Pál Albert   +3 more
doaj   +1 more source

Cyclic Partitions of Complete and Almost Complete Uniform Hypergraphs

open access: yesDiscussiones Mathematicae Graph Theory, 2022
We consider cyclic partitions of the complete k-uniform hypergraph on a finite set V, minus a set of s edges, s ≥ 0. An s-almost t-complementary k-hypergraph is a k-uniform hypergraph with vertex set V and edge set E for which there exists a permutation ...
Dilbarjot, Gosselin Shonda Dueck
doaj   +1 more source

Self-complementing permutations of k-uniform hypergraphs [PDF]

open access: yesDiscrete Mathematics & Theoretical Computer Science, 2009
Graphs and Algorithms A k-uniform hypergraph H = ( V; E) is said to be self-complementary whenever it is isomorphic with its complement (H) over bar = ( V; ((V)(k)) - E). Every permutation sigma of the set V such that sigma(e) is an edge of (H) over bar if and only if e is an element of E is called self-complementing.
Artur Szymański, Adam Pawel Wojda
openaire   +3 more sources

Permutations avoiding the complement of a regular permutation group

open access: yesDiscrete Mathematics Letters, 2023
Summary: The class of permutations avoiding the complement of an arbitrary regular permutation group is described.
openaire   +3 more sources

-partite self-complementary and almost self-complementary -uniform hypergraphs

open access: yesAKCE International Journal of Graphs and Combinatorics, 2020
A hypergraph is said to be -partite -uniform if its vertex set can be partitioned into non-empty sets so that every edge in the edge set , consists of precisely one vertex from each set , . It is denoted as or if for .
L.N. Kamble   +2 more
doaj   +1 more source

Investigating the mental health of university students during the COVID-19 pandemic in a UK university: a machine learning approach using feature permutation importance

open access: yesBrain Informatics, 2023
Mental wellbeing of university students is a growing concern that has been worsening during the COVID-19 pandemic. Numerous studies have gathered empirical data to explore the mental health impact of the pandemic on university students and investigate ...
Tianhua Chen
doaj   +1 more source

Complementation and Reconstitution of Fluorescence from Circularly Permuted and Truncated Green Fluorescent Protein [PDF]

open access: yesBiochemistry, 2009
Green fluorescent protein (GFP) has been used as a proof of concept for a novel "leave-one-out" biosensor design in which a protein that has a segment omitted from the middle of the sequence by circular permutation and truncation binds the missing peptide and reconstitutes its function.
Yao-ming, Huang, Christopher, Bystroff
openaire   +2 more sources

Statistics on ordered partitions of sets [PDF]

open access: yes, 2019
We introduce several statistics on ordered partitions of sets, that is, set partitions where the blocks are permuted arbitrarily. The distribution of these statistics is closely related to the q-Stirling numbers of the second kind. Some of the statistics
Steingrimsson, Einar
core   +2 more sources

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