Results 131 to 140 of about 1,032,211 (315)

Automated Experimentation for Ecological Networks [PDF]

open access: yes, 2011
BackgroundIn ecological networks, natural communities are studied from a complex systems perspective by representing interactions among species within them in the form of a graph, which is in turn analysed using mathematical tools.
Lurgi, M.   +4 more
core   +1 more source

Cell geometry and membrane protein crowding constrain Escherichia coli growth rate, overflow metabolism, respiration, and maintenance energy

open access: yesFEBS Letters, EarlyView.
The physical dimensions and shape of bacterial cells define the surface area available to acquire nutrients and the volume available for synthesizing proteins and DNA. Here, we use computational systems biology to decode the importance of cell geometry as a major determinant of prokaryotic phenotype, including growth rate and metabolic efficiency. This
Ross P. Carlson   +6 more
wiley   +1 more source

Centers of complex networks

open access: yesJournal of Theoretical Biology, 2003
The central vertices in complex networks are of particular interest because they might play the role of organizational hubs. Here, we consider three different geometric centrality measures, excentricity, status, and centroid value, that were originally used in the context of resource placement problems.
Wuchty, Stefan, Stadler, Peter F.
openaire   +4 more sources

Microbiome−host proteostasis crosstalk—An emerging perspective on mechanisms and interventions toward healthy longevity

open access: yesFEBS Letters, EarlyView.
Proteostasis and the gut microbiota play a key role in shaping host physiology. Microbiota‐derived metabolites, vitamins, and RNA modulate host proteostasis. Findings from model systems, including C. elegans, indicate microbes can either stabilize or disrupt host proteostasis.
Abhishek Anil Dubey, Maria Ermolaeva
wiley   +1 more source

Analysis of EEG signals using complex brain networks [PDF]

open access: yes, 2014
The human brain is so complex that two mega projects, the Human Brain Project and the BRAIN Initiative project, are under way in the hope of answering important questions for peoples' health and wellbeing.
Zhu, Guohun
core  

Network Complexity of Foodwebs [PDF]

open access: yesCoRR, 2010
In previous work, I have developed an information theoretic complexity measure of networks. When applied to several real world food webs, there is a distinct difference in complexity between the real food web, and randomised control networks obtained by shuffling the network links.
openaire   +2 more sources

From mice to humans—divergent strategies for intestinal homeostasis and regeneration

open access: yesFEBS Letters, EarlyView.
Recent advances such as organoid genome editing, xenotransplantation, imaging, and whole‐genome sequencing have enabled direct studies of human intestinal stem cells (ISCs). These studies reveal species‐specific features, including slower ISC proliferation, distinct injury responses, slower somatic mutation accumulation in humans, and an inverse ...
Keiko Ishikawa   +2 more
wiley   +1 more source

Do evolutionary algorithm dynamics create complex network structures? [PDF]

open access: yes, 2021
This paper presents a novel method for visualizing the dynamics of evolutionary algorithms in the form of complex networks. We discuss the analogy between individuals in populations in an arbitrary evolutionary algorithm and vertices of a complex network,
Jašek, Roman   +3 more
core  

Phosphoinositides and inositol phosphates as molecular glues

open access: yesFEBS Letters, EarlyView.
Inositol phosphates (IPs) and phosphoinositides (PIPs) regulate diverse eukaryotic processes. Beyond recruiting signaling proteins or acting as structural cofactors, recent studies suggest they mediate protein–protein interactions as natural molecular glues.
Aleshia Seaton‐Terry   +9 more
wiley   +1 more source

Modeling resource consumption in the US air transportation system via minimum-cost percolation

open access: yesNature Communications
Percolation theory has been proven useful to study the robustness of supply-and-demand networks (SDNs) such as transportation and communication infrastructures. Here, we show that it can also be leveraged to understand how resources of SDNs are utilized,
Minsuk Kim   +2 more
doaj   +1 more source

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