Results 111 to 120 of about 188,569 (212)

HybSuite: An integrated pipeline for hybrid capture phylogenomics from reads to trees

Applications in Plant Sciences, EarlyView.
Abstract Premise Hybrid capture sequencing (Hyb‐Seq) is a widely used approach in phylogenomics, providing efficient access to targeted genomic regions. However, deriving high‐quality phylogenetic trees from raw sequencing reads requires extensive bioinformatics processing, which increases complexity, the risk of errors, and challenges in file ...
Yu‐Xuan Liu, Zi‐Jia Lu, Wyckliffe Omondi Omollo, Meng‐Meng Wang, Li‐Guo Zhang, Tao Xiong, Xue‐Qin Wang, Yi‐Ying Wang, Miao Sun   +8 more
wiley   +1 more source

Computational design of class II MHC binding peptide with sequence-based evolution information. [PDF]

Bioinform Adv
Cao Y, Li Y, Ren W, Li W, Yan Z.
europepmc   +1 more source

Off‐target metagenomics: Leveraging whole genome sequencing to study the bacteriome of the liverwort Calasterella californica

Applications in Plant Sciences, EarlyView.
Abstract Premise The recovery of non‐target organism reads, especially when whole organisms are sampled, constitutes a great opportunity for studying microbial communities. The increase in whole genome sequencing feasibility and the development of new marker‐based pipelines enable the use of short reads to study bacterial communities associated with ...
Ixchel S. González‐Ramírez, Michael J. Song, Elijah C. Mehlferber, Brent D. Mishler   +3 more
wiley   +1 more source

Training biologists in Unix command-line skills: From curriculum to interactive online tutorials. [PDF]

PLoS Comput Biol
Khamvongsa-Charbonnier L, Aboukhalil R, Chiapello H, Denecker T, Poulain P, Puthier D, Sand O, Thomas-Chollier M, Toffano-Nioche C.   +8 more
europepmc   +1 more source

BINSEQ: A family of high-performance binary formats for nucleotide sequences. [PDF]

PLoS Comput Biol
Teyssier N, Dobin A.
europepmc   +1 more source

Chicken Pulmonary MicroRNAs Targeting the PB2 (Segment 1) of Avian Influenza Virus

Animal Research and One Health, EarlyView.
The PB2 segment of H5N1 is essential for replication and host adaptation. We screened 200 miRNAs and identified five (gga‐miR‐17‐3p, gga‐miR‐29a‐5p, gga‐miR‐1718, gga‐miR‐16c‐5p, and gga‐miR‐1744‐5p) using thermodynamic stability of heteroduplex, seed sequence complementarity, conservation, and accessibility, offering insights into host antiviral ...
Akanksha Choudhary, Nidhishree N. S, Rakesh Kumar Pundir, Muhasin Asaf V. N, Anamika Mishra, Ashwin Ashok Raut, Megha Agarwal, Amod Kumar   +7 more
wiley   +1 more source

Diagnosing scientific replicability through probabilistic distinguishability. [PDF]

Bioinformatics
Wang P, Cao H, Wen X.
europepmc   +1 more source

The Role of miRNAs in Chicken Immune Regulation and Prospects for Disease‐Resistant Breeding

Animal Research and One Health, EarlyView.
A schematic workflow illustrating the screening of disease‐resistant miRNAs and the generation of miRNA‐based disease‐resistant chickens via PGC‐mediated germline genome editing. ABSTRACT MicroRNAs (miRNAs) are emerging as pivotal regulators of the immune system, playing a decisive role in shaping disease resistance in chicken.
Qiangzhou Wang, Weiran Wu, Qingqing Cai, Jiaxing Wang, Qi Gao, Muhammad Iftikhar, Yulin Bi, Hao Bai, Lihong Gu, Guobin Chang, Shihao Chen   +10 more
wiley   +1 more source

Challenges and Advances in Bioinformatics and Computational Biology. [PDF]

Curr Issues Mol Biol
Si T, Gong H.
europepmc   +1 more source

Precision medicine in paediatrics: Progress and priorities

British Journal of Clinical Pharmacology, EarlyView.
Precision medicine is revolutionizing personalized healthcare, advancing both diagnostics and therapeutics at an unprecedented pace. Reviewing the paediatric applications of pharmacometrics, pharmacogenomics and advanced therapy medicinal products highlights not only the relevance of these exciting innovations to frontline care but also the significant
Nicola Husain, Claire Booth, Joseph F. Standing, Charlotte I. S. Barker   +3 more
wiley   +1 more source