Results 141 to 150 of about 4,294,998 (178)

Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France

Emerging Infectious Diseases, 2017
During 2015–2016, we evaluated the performance of whole-genome sequencing (WGS) as a routine typing tool. Its added value for microbiological and epidemiologic surveillance of listeriosis was compared with that for pulsed-field gel electrophoresis (PFGE),
Alexandra Moura, Mathieu Tourdjman, Alexandre Leclercq, Estelle Hamelin, Edith Laurent, Nathalie Fredriksen, Dieter Van Cauteren, Hélène Bracq-Dieye, Pierre Thouvenot, Guillaume Vales, Nathalie Tessaud-Rita, Mylène M. Maury, Andreea Alexandru, Alexis Criscuolo, Emmanuel Quevillon, Marie-Pierre Donguy, Vincent Enouf, Henriette de Valk, Sylvain Brisse, Marc Lecuit   +19 more
doaj   +1 more source

Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans. [PDF]

, 2012
BACKGROUND: We applied comparative phylogenomics (whole genome comparisons of microbes using DNA microarrays combined with Bayesian-based phylogenies) to investigate S.
Hinds Jason, Eric S Donkor, Donkor, ES, Martin Antonio, Stabler Richard A, Wren, BW, Hinds, Jason, Wren, Brendan W, Antonio Martin, Adegbola Richard A, Hinds, J, Antonio, M, Donkor Eric S, Wren Brendan W, Richard A Stabler, Jason Hinds, Adegbola, Richard A, Stabler, RA, Stabler, Richard A, Adegbola, RA, Donkor, Eric S, Antonio, Martin, Richard A Adegbola, Brendan W Wren   +23 more
core   +1 more source

Genome-scale multilocus microsatellite typing of Trypanosoma cruzi discrete typing unit I reveals phylogeographic structure and specific genotypes linked to human infection. [PDF]

, 2009
Trypanosoma cruzi is the most important parasitic infection in Latin America and is also genetically highly diverse, with at least six discrete typing units (DTUs) reported: Tc I, IIa, IIb, IIc, IId, and IIe.
Torrico, Faustino, Valente, Vera, Lewis, Michael D., Llewellyn Martin S., Valente Vera, Jorge Vargas, Gaunt Michael W., Valente, Sebastiao A., Carrasco, Hernan J, Yeo, Matthew, Vera Valente, Michael A Miles, Miles Michael A., Gaunt, Michael W., Hernan J Carrasco, Miles, Michael A., Gaunt, Michael W, Carrasco, Hector Jeronimo, Vargas, Jorge, Torrico Faustino, Yeo Matthew, Michael D Lewis, Carrasco, Hernan J., Diosque Patricio, Valente Sebastiao A., Matthew Yeo, Vargas Jorge, Diosque, Patricio, Patricio Diosque, Llewellyn, Martin S, Martin S Llewellyn, Sebastiao A Valente, Miles, Michael A, Faustino Torrico, Lewis, Michael D, Carrasco Hernan J., Llewellyn, Martin S., Michael W Gaunt, Valente, Sebastiao A, Lewis Michael D.   +39 more
core   +2 more sources

MLSTar: automatic multilocus and core genome sequence typing in R

, 2018
Multilocus sequence typing (MLST) is a standard tool in population genetics and bacterial epidemiology that assesses the genetic variation present in a reduced number of housekeeping genes (typically seven) along the genome.
Ignacio Ferrés, Gregorio Iraola
core   +2 more sources

Genotypic diversity is associated with clinical outcome and phenotype in cryptococcal meningitis across Southern Africa [PDF]

, 2015
This work was supported by Wellcome Trust (UK) (www.wellcome.ac.uk) awards to TB (WT069991), GM (WT098316), and JNJ (WT081794); Medical Research Council (MRC UK) (www.mrc.ac.uk) awards to MCF (K000373/1), RCM (G0601171), TSH (G1002327); European Research
Fisher, Matthew C, Matthew C Fisher, Matthew C. Fisher (129755), Angela Loyse (292490), Meintjes, Graeme, Fisher, Matthew C., Emma J. Robertson (760738), Sabiiti, Wilber, O'Hanlon, SJ, O'Hanlon, Simon J, Joseph N Jarvis, Tihana Bicanic (718812), Thomas S. Harrison (222993), Fisher, MC, Karen M Fuentes-Cabrejo, Fuentes-Cabrejo, KM, Fuentes-Cabrejo, Karen M, Angela Loyse, Fisher, M, Harrison, Thomas S, Harrison, TS, Robertson, EJ, Simon J. O’Hanlon (760740), Loyse, Angela, Meintjes, G, Simon J O'Hanlon, Robin C May, Jarvis, Joseph N, Emma J Robertson, Wilber Sabiiti (170648), Thomas S Harrison, Mathew A. Beale (663616), Wilber Sabiiti, Robertson, Emma J, Joseph N. Jarvis (435279), Robertson, Emma J., Jarvis, JN, May, Robin C, Mathew A Beale, Karen M. Fuentes-Cabrejo (760739), Graeme Meintjes (221054), Beale, Mathew A, Tihana Bicanic, Sabiiti, W, Bicanic, T, May, RC, Loyse, A, May, Robin C; id_orcid, Bicanic, Tihana, Graeme Meintjes, Beale, MA, Robin C. May (170650)   +51 more
core   +1 more source

Principles for developing core genome multilocus sequence typing systems

, 2018
Core genome multilocus sequence typing is a next generation typing method for the long-term tracking of pathogenic bacteria. Although such methods provide the very high discriminatory power required by public health agencies, they are prone to ...
Barker, Dillon Oliver Reese
core  

Genomic and Antimicrobial Resistance Analysis of an ST25 Streptococcus suis Strain Isolated from a Human in Zhejiang Province, China

Pathogens
A Streptococcus suis strain isolated from the blood of a patient in Zhejiang Province, China, was analysed using whole-genome sequencing and tested for antimicrobial resistance. The isolated strain was identified as S.
Shuirong Zhu, Xiaofang Wu, Wenwu Yao, Zhuoying Wu, Lingbo Wang, Zhangnv Yang, Beibei Wu, Yanjun Zhang   +7 more
doaj   +1 more source

A core genome multi-locus sequence typing scheme for Streptococcus uberis: an evolution in typing a genetically diverse pathogen [PDF]

Streptococcus uberis is a globally endemic and poorly controlled cause of bovine mastitis impacting the sustainability of the modern dairy industry. A core genome was derived from 579 newly sequenced S.
Coffey, Tracey, Jolley, K, Leigh, J, Blanchard, Adam, Whiley, D, Whiley, Daniel, Leigh, James, Blanchard, A, Coffey, T, Jolley, Keith   +9 more
core   +1 more source

Nosocomial outbreak of Ralstonia mannitolilytica associated with prefilled saline flush syringes distributed in Europe, Germany, March to September 2026

Eurosurveillance
A nosocomial outbreak of Ralstonia mannitolilytica bloodstream infections in Germany from March to September 2026 included 16 cases (≤ 6 allelic differences using core genome multilocus sequence typing) across seven hospitals.
Sebastian Haller
doaj   +1 more source

Subtyping Evaluation of Salmonella Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads. [PDF]

Appl Environ Microbiol, 2022
Xian Z, Li S, Mann DA, Huang Y, Xu F, Wu X, Tang S, Zhang G, Stevenson A, Ge C, Deng X.   +10 more
europepmc   +1 more source