Results 1 to 10 of about 5,262 (154)

cgMLST@Taiwan: A web service platform for Vibrio cholerae cgMLST profiling and global strain tracking

Journal of Microbiology, Immunology and Infection, 2022
Background: Cholera, a rapidly dehydrating diarrheal disease caused by toxigenic Vibrio cholerae, is a leading cause of morbidity and mortality in some regions of the world.
Yu-Ping Hong, Chien-Shun Chiou, Yen-Yi Liu   +2 more
exaly   +4 more sources

In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes

BMC Genomics, 2022
Background Whole genome sequencing analyzed by core genome multi-locus sequence typing (cgMLST) is widely used in surveillance of the pathogenic bacteria Listeria monocytogenes.
Giuliano Garofolo, Alexandra Chiaverini, Sylvain Brisse   +2 more
exaly   +3 more sources

Using core genome multilocus sequence typing (cgMLST) for vancomycin-resistant Enterococcus faecium isolates to guide infection control interventions and end an outbreak [PDF]

Journal of Global Antimicrobial Resistance, 2021
Objectives: Until July 2016, vancomycin-resistantEnterococcus faecium (VREfm) was sporadically detected in Odense University Hospital, Denmark. After July 2016, the number of VREfm cases increased.
Michael Kemp, Sanne Kjær Hansen, Anette Hammerum   +2 more
exaly   +4 more sources

Oxford Nanopore Technologies R10 sequencing enables accurate cgMLST-based bacterial outbreak investigation of Neisseria meningitidis and Salmonella enterica when accounting for methylation-related errors

Journal of Clinical Microbiology
Core-genome multi-locus sequence typing (cgMLST) is a well-established and standardized method for genomics-based cluster detection and phylogenomic analysis of bacteria.
Pieter-Jan Ceyssens, Nancy H C J Roosens, Wesley Mattheus   +2 more
exaly   +4 more sources

A new core-genome MLST approach for Chlamydia trachomatis genomic surveillance and research [PDF]

Nature Communications
Chlamydia trachomatis causes common sexually transmitted infections. The use of whole-genome sequencing for its classification and surveillance is limited due to technical challenges and the lack of standardized typing frameworks.
Zohra Lodhia, Verónica Mixão, Joana Isidro, Rita Ferreira, Dora Cordeiro, Cristina Correia, Inês João, Joana Pereira, João Paulo Gomes, Maria José Borrego, Vítor Borges   +10 more
doaj   +2 more sources

Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China

Frontiers in Cellular and Infection Microbiology, 2023
IntroductionClostridioides difficile (C. difficile) is a nosocomial bacterial pathogen that causes antibiotic-associated diarrhea mediated by cellular exotoxins secreted into the intestine during bacterial growth.
Yuan Yuan Wang
exaly   +3 more sources

Assessing mutation accumulation in DNA repair-deficient Listeria monocytogenes: implications for cgMLST cluster thresholds in outbreak analysis

Frontiers in Cellular and Infection Microbiology
BackgroundListeria (L.) monocytogenes is primarily transmitted via contaminated food and can cause listeriosis, an infection often associated with sepsis and meningitis in at-risk individuals. Accurate outbreak detection relies on whole genome sequencing
Anna Stöger, Alexander Indra
exaly   +3 more sources

Analysis of sporadic cases of invasive listeriosis in a metropolis

Журнал микробиологии, эпидемиологии и иммунобиологии, 2021
Introduction. Listeriosis is a foodborne infection, especially dangerous for people in at-risk groups. Susceptibility to listeria infection is determined by a complex of reasons: environmental factors, host immune status, and pathogen virulence.
O. L. Voronina, I. S. Tartakovsky, N. D. Yuyshuk, N. N. Ryzhova, E. I. Aksenova, M. S. Kunda, A. V. Kutuzova, A. R. Melkumyan, T. I. Karpova, O. A. Gruzdeva, E. A. Klimova, G. N. Karetkina, O. Yu. Chemeris, T. A. Tarasova, Yu. E. Dronina, O. E. Orlova, E. N. Burmistrova, A. N. Tsibin   +17 more
doaj   +1 more source

Epidemiological Investigation of Hospital Transmission of Corynebacterium striatum Infection by Core Genome Multilocus Sequence Typing Approach

Microbiology Spectrum, 2023
Corynebacterium striatum has recently received increasing attention due to its multiple antimicrobial resistances and its role as an invasive infection/outbreak agent.
Yutong Kang, Shenglin Chen, Beijia Zheng, Xiaoli Du, Zhenpeng Li, Zhizhou Tan, Haijian Zhou, Jia Huang, Leihao Tian, Jiaxin Zhong, Xueli Ma, Fang Li, Jiang Yao, Yu Wang, Meiqin Zheng, Zhenjun Li   +15 more
doaj   +1 more source

A Core Genome Multilocus Sequence Typing Scheme for Streptococcus mutans

mSphere, 2020
Streptococcus mutans is one of the primary pathogens responsible for the development of dental caries. Recent whole-genome sequencing (WGS)-based core genome multilocus sequence typing (cgMLST) approaches have been employed in epidemiological studies of ...
Shanshan Liu, Xiaoliang Li, Zhenfei Guo, Hongsheng Liu, Yu Sun, Yudong Liu, Qinglong Wang, Shengkai Liao, Kai Zhang   +8 more
doaj   +3 more sources