Results 11 to 20 of about 3,903 (113)

Using core genome multilocus sequence typing (cgMLST) for vancomycin-resistant Enterococcus faecium isolates to guide infection control interventions and end an outbreak

Journal of Global Antimicrobial Resistance, 2021
Objectives: Until July 2016, vancomycin-resistantEnterococcus faecium (VREfm) was sporadically detected in Odense University Hospital, Denmark. After July 2016, the number of VREfm cases increased.
Sanne Kjær Hansen, Lise Andersen, Mette Detlefsen, Anette Holm, Louise Roer, Panagiotis Antoniadis, Marianne Nielsine Skov, Anette M. Hammerum, Michael Kemp   +8 more
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Assessment of metrics in next-generation sequencing experiments for use in core-genome multilocus sequence type [PDF]

PeerJ, 2021
With the reduction in the cost of next-generation sequencing, whole-genome sequencing (WGS)–based methods such as core-genome multilocus sequence type (cgMLST) have been widely used.
Yen-Yi Liu, Bo-Han Chen, Chih-Chieh Chen, Chien-Shun Chiou   +3 more
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Comparing core-genome MLST with PFGE and MLST for cluster analysis of carbapenem-resistant Acinetobacter baumannii

Journal of Global Antimicrobial Resistance, 2022
: Objectives: Carbapenem-resistant Acinetobacter baumannii (CRAB) is a prevalent pathogen contributing to hospital infections. Pulsed-field gel electrophoresis (PFGE), multilocus sequence typing (MLST) and core-genome MLST (cgMLST) are frequently used ...
Tingting Li, Yunxing Yang, Rushuang Yan, Peng Lan, Haiyang Liu, Ying Fu, Xiaoting Hua, Yan Jiang, Zhihui Zhou, Yunsong Yu   +9 more
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Core-genome multilocus sequence typing and core-SNP analysis of Clostridium neonatale strains isolated in different spatio-temporal settings

Microbiology Spectrum, 2023
Clostridium neonatale was described as a new species within the Clostridium genus cluster I sensu stricto. It was recovered from the gut microbiota of infants and has been associated with necrotizing enterocolitis (NEC), a severe gastrointestinal disease
Victoria Mesa, Johanne Delannoy, Laurent Ferraris, Laure Diancourt, Christelle Mazuet, Frédéric Barbut, Julio Aires   +6 more
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Molecular Characterization of Carbapenem-Resistant Acinetobacter baumannii Isolates Among Intensive Care Unit Patients and Environment

Infection and Drug Resistance, 2022
Hangbin Hu,1,* Yifeng Lou,1,2,* Haiting Feng,3 Jingjing Tao,1 Weixiao Shi,1 Shuangling Ni,4 Qunying Pan,3 Tianxiang Ge,3 Ping Shen,1 Zifeng Zhong,3 Yonghong Xiao,1 Tingting Qu1,3 1State Key Laboratory for Diagnosis and Treatment of Infectious ...
Hu H, Lou Y, Feng H, Tao J, Shi W, Ni S, Pan Q, Ge T, Shen P, Zhong Z, Xiao Y, Qu T   +11 more
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Whole Genome Sequencing for Tracing Geographical Origin of Imported Cases of Human Brucellosis in Sweden

Microorganisms, 2019
Human infections with Brucella melitensis are occasionally reported in Sweden, despite the fact that the national flocks of sheep and goats are officially free from brucellosis. The aim of our study was to analyze 103 isolates of B.
Lorena Sacchini, Tara Wahab, Elisabetta Di Giannatale, Katiuscia Zilli, Anna Abass, Giuliano Garofolo, Anna Janowicz   +6 more
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Molecular subtyping for source tracking of Escherichia coli using core genome multilocus sequence typing at a food manufacturing plant.

PLoS ONE, 2021
When harmful bacteria are detected in the final product at a food manufacturing plant, it is necessary to identify and eliminate the source of contamination so that it does not occur again.
Ayaka Nakamura, Hajime Takahashi, Maki Arai, Tomoki Tsuchiya, Shohei Wada, Yuki Fujimoto, Yoshiomi Shimabara, Takashi Kuda, Bon Kimura   +8 more
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The core genome multi-locus sequence typing of Mycoplasma anserisalpingitidis

BMC Genomics, 2020
Background Mycoplasma anserisalpingitidis is a waterfowl pathogen that mainly infects geese, can cause significant economic losses and is present worldwide.
Áron B. Kovács, Zsuzsa Kreizinger, Barbara Forró, Dénes Grózner, Alexa Mitter, Szilvia Marton, Krisztina Bali, Anna Sawicka, Grzegorz Tomczyk, Krisztián Bányai, Miklós Gyuranecz   +10 more
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Comparing Multiple Locus Variable-Number Tandem Repeat Analyses with Whole-Genome Sequencing as Typing Method for Salmonella Enteritidis Surveillance in The Netherlands, January 2019 to March 2020

Microbiology Spectrum, 2022
In the Netherlands, whole-genome sequencing (WGS) was implemented as routine typing tool for Salmonella Enteritidis isolates in 2019. Multiple locus variable-number tandem repeat analyses (MLVA) was performed in parallel.
Roan Pijnacker, Maaike van den Beld, Kim van der Zwaluw, Anjo Verbruggen, Claudia Coipan, Alejandra Hernandez Segura, Lapo Mughini-Gras, Eelco Franz, Thijs Bosch   +8 more
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Expanding of ST11 Carbapenemase-Producing Klebsiella pneumoniae Subclones in a Chinese Hospital, Shenzhen, China

Infection and Drug Resistance, 2021
Min Zhang,1,2 Jia Li,3 Yuemei Lu,4 Weiyuan Wu,4 Jinsong Wu,4 Yanji Xu,1,5 Yuxin Zhong,1,2 Shiyi Liu,1,2 Chuchu Lin,6 Shuye Xu,3 Dandan Chen,1,2 Xuefeng Gao,7 Yutian Luo,8 Huaisheng Chen,8 Xueyan Liu,8 Wei Huang1,2 1Shenzhen People’s Hospital ...
Zhang M, Li J, Lu Y, Wu W, Wu J, Xu Y, Zhong Y, Liu S, Lin C, Xu S, Chen D, Gao X, Luo Y, Chen H, Liu X, Huang W   +15 more
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