Results 21 to 30 of about 497,683 (263)
The Protein-DNA Interface database [PDF]
BMC Bioinformatics, 2010 The Protein-DNA Interface database (PDIdb) is a repository containing relevant structural information of Protein-DNA complexes solved by X-ray crystallography and available at the Protein Data Bank. The database includes a simple functional classification of the protein-DNA complexes that consists of three hierarchical levels: Class, Type and Subtype ...
Norambuena Arenas, Tomás. +1 more
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Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome
mSystems, 2023 Metaproteomics, a method for untargeted, high-throughput identification of proteins in complex samples, provides functional information about microbial communities and can tie functions to specific taxa.
Elliot M. Lee +8 more
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Mining Protein Databases using Machine Learning Techniques
Journal of Integrative Bioinformatics, 2008 With a large amount of information relating to proteins accumulating in databases widely available online, it is of interest to apply machine learning techniques that, by extracting underlying statistical regularities in the data, make predictions about ...
Camargo Renata da Silva +1 more
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Improving classification in protein structure databases using text mining
BMC Bioinformatics, 2009 Background The classification of protein domains in the CATH resource is primarily based on structural comparisons, sequence similarity and manual analysis.
Jones David T +2 more
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Frontiers in Molecular Biosciences, 2021 Human genome resequencing projects provide an unprecedented amount of data about single-nucleotide variations occurring in protein-coding regions and often leading to observable changes in the covalent structure of gene products.
Castrense Savojardo +4 more
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The PIR integrated protein databases and data retrieval system
Data Science Journal, 2006 The Protein Information Resource (PIR) provides many databases and tools to support genomic and proteomic research. PIR is a member of UniProt—Universal Protein Resource—the central repository of protein sequence and function, which maintains UniProt ...
H Huang, ZZ Hu, BE Suzek, CH Wu
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PROTEIN IDENTIFICATION USING SEQUENCE DATABASES
Scientific Journal of Astana IT University, 2020 The bottom-up proteomics approach (also known as the shotgun approach), based on the digestion of proteins in peptides and their sequencing using tandem mass spectrometry (MS/MS), has become widespread. The identification of peptides from the obtained MS/
Golenko Ye., A. Ismailova, Ye. Rais
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BMC Bioinformatics, 2007 Background Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer to identical proteins is a major challenge.
Leinonen Rasko +8 more
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Proteomics: taking over where genomics leaves off
Czech Journal of Genetics and Plant Breeding, 2010 The proteomic studies are simultaneously developed in several directions and significantly influence our notions on the capabilities of biological sciences.
Ritu MAHAJAN, Priyanka GUPTA
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Comparative Assessment of Protein Kinase Inhibitors in Public Databases and in PKIDB
Molecules, 2020 Since the first approval of a protein kinase inhibitor (PKI) by the Food and Drug Administration (FDA) in 2001, 55 new PKIs have reached the market, and many inhibitors are currently being evaluated in clinical trials.
Colin Bournez +6 more
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