Results 31 to 40 of about 542,743 (309)
Context-specific interactions in literature-curated protein interaction databases
BMC Genomics, 2018 Background Databases of literature-curated protein-protein interactions (PPIs) are often used to interpret high-throughput interactome mapping studies and estimate error rates.
R. Greg Stacey +3 more
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How Far Are We from the Completion of the Human Protein Interactome Reconstruction?
Biomolecules, 2022 After more than fifteen years from the first high-throughput experiments for human protein–protein interaction (PPI) detection, we are still wondering how close the completion of the genome-scale human PPI network reconstruction is, what needs to be ...
Georgios N. Dimitrakopoulos +2 more
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Characterization of Protein Complexes and Subcomplexes in Protein-Protein Interaction Databases
Biochemistry Research International, 2015 The identification and characterization of protein complexes implicated in protein-protein interaction data are crucial to the understanding of the molecular events under normal and abnormal physiological conditions.
Nazar Zaki +2 more
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Evaluating deterministic motif significance measures in protein databases
Algorithms for Molecular Biology, 2007 Background Assessing the outcome of motif mining algorithms is an essential task, as the number of reported motifs can be very large. Significance measures play a central role in automatically ranking those motifs, and therefore alleviating the analysis ...
Azevedo Paulo J, Ferreira Pedro
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DIP: the Database of Interacting Proteins [PDF]
Nucleic Acids Research, 2000 The Database of Interacting Proteins (DIP; http://dip.doe-mbi.ucla.edu) is a database that documents experimentally determined protein-protein interactions. This database is intended to provide the scientific community with a comprehensive and integrated tool for browsing and efficiently extracting information about protein interactions and interaction
Ioannis Xenarios +5 more
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MultitaskProtDB: a database of multitasking proteins [PDF]
Nucleic Acids Research, 2013 We have compiled MultitaskProtDB, available online at http://wallace.uab.es/multitask, to provide a repository where the many multitasking proteins found in the literature can be stored. Multitasking or moonlighting is the capability of some proteins to execute two or more biological functions. Usually, multitasking proteins are experimentally revealed
Sergio Hernández +7 more
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Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome
mSystems, 2023 Metaproteomics, a method for untargeted, high-throughput identification of proteins in complex samples, provides functional information about microbial communities and can tie functions to specific taxa.
Elliot M. Lee +8 more
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The Protein-DNA Interface database [PDF]
BMC Bioinformatics, 2010 The Protein-DNA Interface database (PDIdb) is a repository containing relevant structural information of Protein-DNA complexes solved by X-ray crystallography and available at the Protein Data Bank. The database includes a simple functional classification of the protein-DNA complexes that consists of three hierarchical levels: Class, Type and Subtype ...
Tomás Norambuena, Francisco Melo 0001
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Frontiers in Molecular Biosciences, 2021 Human genome resequencing projects provide an unprecedented amount of data about single-nucleotide variations occurring in protein-coding regions and often leading to observable changes in the covalent structure of gene products.
Castrense Savojardo +4 more
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The PIR integrated protein databases and data retrieval system
Data Science Journal, 2006 The Protein Information Resource (PIR) provides many databases and tools to support genomic and proteomic research. PIR is a member of UniProt—Universal Protein Resource—the central repository of protein sequence and function, which maintains UniProt ...
H Huang, ZZ Hu, BE Suzek, CH Wu
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