Results 21 to 30 of about 516,773 (266)

DIP: the Database of Interacting Proteins [PDF]

Nucleic Acids Research, 2000
The Database of Interacting Proteins (DIP; http://dip.doe-mbi.ucla.edu) is a database that documents experimentally determined protein-protein interactions. This database is intended to provide the scientific community with a comprehensive and integrated tool for browsing and efficiently extracting information about protein interactions and interaction
Ioannis Xenarios, Danny W. Rice, Lukasz Salwínski, Marisa K. Baron, Edward M. Marcotte, David Eisenberg 0001   +5 more
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MultitaskProtDB: a database of multitasking proteins [PDF]

Nucleic Acids Research, 2013
We have compiled MultitaskProtDB, available online at http://wallace.uab.es/multitask, to provide a repository where the many multitasking proteins found in the literature can be stored. Multitasking or moonlighting is the capability of some proteins to execute two or more biological functions. Usually, multitasking proteins are experimentally revealed
Sergio Hernández, Gabriela Ferragut, Isaac Amela, JosepAntoni Perez-Pons, Jaume Piñol, Angel Mozo-Villarias, Juan Cedano, Enrique Querol   +7 more
openaire   +3 more sources

Improving classification in protein structure databases using text mining

BMC Bioinformatics, 2009
Background The classification of protein domains in the CATH resource is primarily based on structural comparisons, sequence similarity and manual analysis.
Jones David T, Redfern Oliver C, Koussounadis Antonis   +2 more
doaj   +1 more source

Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome

mSystems, 2023
Metaproteomics, a method for untargeted, high-throughput identification of proteins in complex samples, provides functional information about microbial communities and can tie functions to specific taxa.
Elliot M. Lee, Sujatha Srinivasan, Samuel O. Purvine, Tina L. Fiedler, Owen P. Leiser, Sean C. Proll, Samuel S. Minot, Brooke L. Deatherage Kaiser, David N. Fredricks   +8 more
doaj   +1 more source

The Protein-DNA Interface database [PDF]

BMC Bioinformatics, 2010
The Protein-DNA Interface database (PDIdb) is a repository containing relevant structural information of Protein-DNA complexes solved by X-ray crystallography and available at the Protein Data Bank. The database includes a simple functional classification of the protein-DNA complexes that consists of three hierarchical levels: Class, Type and Subtype ...
Tomás Norambuena, Francisco Melo 0001
openaire   +6 more sources

Mining Protein Databases using Machine Learning Techniques

Journal of Integrative Bioinformatics, 2008
With a large amount of information relating to proteins accumulating in databases widely available online, it is of interest to apply machine learning techniques that, by extracting underlying statistical regularities in the data, make predictions about ...
Camargo Renata da Silva, Niranjan Mahesan   +1 more
doaj   +1 more source

Mapping OMIM Disease–Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes

Frontiers in Molecular Biosciences, 2021
Human genome resequencing projects provide an unprecedented amount of data about single-nucleotide variations occurring in protein-coding regions and often leading to observable changes in the covalent structure of gene products.
Castrense Savojardo, Giulia Babbi, Pier Luigi Martelli, Rita Casadio, Rita Casadio   +4 more
doaj   +1 more source

The PIR integrated protein databases and data retrieval system

Data Science Journal, 2006
The Protein Information Resource (PIR) provides many databases and tools to support genomic and proteomic research. PIR is a member of UniProt—Universal Protein Resource—the central repository of protein sequence and function, which maintains UniProt ...
H Huang, ZZ Hu, BE Suzek, CH Wu
doaj   +1 more source

Protein Bioinformatics Databases and Resources [PDF]

, 2010
In the past decades, a variety of publicly available data repositories and resources have been developed to support protein related information management, data-driven hypothesis generation and biological knowledge discovery. However, there is also an increasing confusion for the researchers who are trying to quickly find the appropriate resources to ...
Chuming, Chen, Hongzhan, Huang, Cathy H, Wu   +2 more
openaire   +3 more sources

PROTEIN IDENTIFICATION USING SEQUENCE DATABASES

Scientific Journal of Astana IT University, 2020
The bottom-up proteomics approach (also known as the shotgun approach), based on the digestion of proteins in peptides and their sequencing using tandem mass spectrometry (MS/MS), has become widespread. The identification of peptides from the obtained MS/
Golenko Ye., A. Ismailova, Ye. Rais
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