Results 111 to 120 of about 2,351 (162)

Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. [PDF]

Genome Res
Kuronen J, Horsfield ST, Pöntinen AK, Mallawaarachchi S, Arredondo-Alonso S, Thorpe H, Gladstone RA, Willems RJL, Bentley SD, Croucher NJ, Pensar J, Lees JA, Tonkin-Hill G, Corander J.   +13 more
europepmc   +1 more source

Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding. [PDF]

Genome Res
Antipov D, Rautiainen M, Nurk S, Walenz BP, Solar SJ, Phillippy AM, Koren S.   +6 more
europepmc   +1 more source

Splitting Vertices of Bipartite Graphs Preserves de Bruijn–Erdős Property [PDF]

Discrete Mathematics Letters
Laurent Beaudou, Guillermo Gamboa Quintero   +1 more
doaj   +1 more source

Building large updatable colored de Bruijn graphs via merging. [PDF]

Bioinformatics, 2019
Muggli MD, Alipanahi B, Boucher C.
europepmc   +1 more source

cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs. [PDF]

Bioinformatics, 2019
Tolstoganov I, Bankevich A, Chen Z, Pevzner PA.   +3 more
europepmc   +1 more source

Integrating long-range connectivity information into de Bruijn graphs. [PDF]

Bioinformatics, 2018
Turner I, Garimella KV, Iqbal Z, McVean G.   +3 more
europepmc   +1 more source

Genome-wide somatic variant calling using localized colored de Bruijn graphs. [PDF]

Commun Biol, 2018
Narzisi G, Corvelo A, Arora K, Bergmann EA, Shah M, Musunuri R, Emde AK, Robine N, Vacic V, Zody MC.   +9 more
europepmc   +1 more source

Assembly of long error-prone reads using de Bruijn graphs. [PDF]

Proc Natl Acad Sci U S A, 2016
Lin Y, Yuan J, Kolmogorov M, Shen MW, Chaisson M, Pevzner PA.   +5 more
europepmc   +1 more source

Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus. [PDF]

BMC Genomics, 2019
Fu S, Chang PL, Friesen ML, Teakle NL, Tarone AM, Sze SH.   +5 more
europepmc   +1 more source

Identifying splicing regulatory elements with de Bruijn graphs. [PDF]

J Comput Biol, 2014
Badr E, Heath LS.
europepmc   +1 more source