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Compacting de Bruijn graphs from sequencing data quickly and in low memory. [PDF]
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How to apply de Bruijn graphs to genome assembly. [PDF]
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. [PDF]
Proc Natl Acad Sci U S A, 2012 Pell J +5 more
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Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data. [PDF]
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Compact representation of k-mer de Bruijn graphs for genome read assembly. [PDF]
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De novo assembly and genotyping of variants using colored de Bruijn graphs. [PDF]
Nat Genet, 2012 Iqbal Z +4 more
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A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data. [PDF]
BMC Genomics, 2014 Sze SH, Tarone AM.
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De-Bruijn graph partitioning for scalable and accurate DNA storage processing. [PDF]
BioinformaticsDe Moor F, Boullé O, Lavenier D.
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MetaFX: feature extraction from whole-genome metagenomic sequencing data. [PDF]
BioinformaticsIvanov A +4 more
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