Results 51 to 60 of about 2,351 (162)

Compressed Weighted de Bruijn Graphs.

, 2021
We propose a new compressed representation for weighted de Bruijn graphs, which is based on the idea of delta-encoding the variations of k-mer abundances on a spanning branching of the graph. Our new data structure is likely to be of practical value: to give an idea, when combined with the compressed BOSS de Bruijn graph representation, it encodes the ...
Italiano G. F., Prezza N., Sinaimeri B., Venturini R.   +3 more
openaire   +6 more sources

Variable-Order de Bruijn Graphs [PDF]

2015 Data Compression Conference, 2015
The de Bruijn graph $G_K$ of a set of strings $S$ is a key data structure in genome assembly that represents overlaps between all the $K$-length substrings of $S$. Construction and navigation of the graph is a space and time bottleneck in practice and the main hurdle for assembling large, eukaryote genomes.
Christina Boucher 0001, Alexander Bowe, Travis Gagie, Simon J. Puglisi, Kunihiko Sadakane   +4 more
openaire   +2 more sources

A De Bruijn–Erdős Theorem for Chordal Graphs [PDF]

The Electronic Journal of Combinatorics, 2015
A special case of a combinatorial theorem of De Bruijn and Erdős asserts that every noncollinear set of $n$ points in the plane determines at least $n$ distinct lines. Chen and Chávtal suggested a possible generalization of this assertion in metric spaces with appropriately defined lines.
Laurent Beaudou, J. Adrian Bondy, Xiaomin Chen, Ehsan Chiniforooshan, Maria Chudnovsky, Vasek Chvátal, Nicolas Fraiman, Yori Zwols   +7 more
openaire   +4 more sources

Immune checkpoint inhibitor‐induced eosinophilic fasciitis: A pharmacovigilance and EADV Task force study

Journal of the European Academy of Dermatology and Venereology, EarlyView.
A comprehensive retrospective analysis of 121 immune checkpoint inhibitor‐induced eosinophilic fasciitis cases, including clinical presentation, diagnostic features and treatment outcomes using data from the EADV Task Force ‘Dermatology for Cancer Patients’, two international pharmacovigilance databases and the current literature.
Tristan V. M. Bruijn, Alexandre O. Gérard, Maëlys Labat, Zoe Apalla, Wouter van Binsbergen, Dimitra Koumaki, Valerian Rivet, Frederic Dezoteux, Damien Giacchero, Michael R. Ardern‐Jones, Kara Heelan, Jesse P. Hirner, Ander Mayor, Mariette Labots, Markus V. Starink, Conny J. van der Laken, Vincent Sibaud, Yannick S. Elshot   +17 more
wiley   +1 more source

The Spectrum of de Bruijn and Kautz Graphs

European Journal of Combinatorics, 1998
The authors give a complete description of the spectrum of de Bruijn and Kautz graphs. Moreover, they give several applications of these results by deriving tight bounds on the expansion parameters of those graphs.
Charles Delorme, Jean-Pierre Tillich
openaire   +1 more source

How Open Standards for Person‐Centered Care Become Checklists Again in Regulatory Practice: Underlying Mechanisms Explained

Regulation &Governance, EarlyView.
ABSTRACT In health care regulation, open outcome‐oriented standards are used to provide flexibility for care organizations to determine how to deal with complex issues. What remains understudied is how this works out in practice. This paper studies how inspectors use open standards to regulate the complex issue of person‐centered care.
Mirjam Kalisvaart, Lieke Oldenhof, Roland Bal, Anne Margriet Pot   +3 more
wiley   +1 more source

Consumer Behavior Analysis in Digital Marketing Using AI and Big Data Analytics: A Narrative Review and Methodological Taxonomy

WIREs Data Mining and Knowledge Discovery, Volume 16, Issue 3, September 2026.
AI and Big Data in Consumer Behavior Analysis. ABSTRACT The rapid expansion of digital consumer data has challenged traditional approaches to understanding behavior in digital marketing. Existing reviews often focus on individual methods and give limited guidance on how analytical techniques compare or how they should be selected for specific marketing
Leonidas Theodorakopoulos, Alexandra Theodoropoulou   +1 more
wiley   +1 more source

Variable-order reference-free variant discovery with the Burrows-Wheeler Transform

BMC Bioinformatics, 2020
Background In [Prezza et al., AMB 2019], a new reference-free and alignment-free framework for the detection of SNPs was suggested and tested. The framework, based on the Burrows-Wheeler Transform (BWT), significantly improves sensitivity and precision ...
Nicola Prezza, Nadia Pisanti, Marinella Sciortino, Giovanna Rosone   +3 more
doaj   +1 more source

SAUTE: sequence assembly using target enrichment

BMC Bioinformatics, 2021
Background Illumina is the dominant sequencing technology at this time. Short length, short insert size, some systematic biases, and low-level carryover contamination in Illumina reads continue to make assembly of repeated regions a challenging problem ...
Alexandre Souvorov, Richa Agarwala
doaj   +1 more source

Accurate Prediction of Central Conventional Chondrosarcoma Risk and Outcome Using Methylation Profiling: CHROME

Genes, Chromosomes and Cancer, Volume 65, Issue 8, August 2026.
ABSTRACT Chondrosarcomas are malignant cartilage‐forming bone tumors with heterogeneous behavior, making prognostication and clinical management challenging. Histological grading is the primary tool for predicting clinical outcomes in conventional chondrosarcoma.
Sara Cardoso, Baptiste Ameline, Sanne Venneker, Debora M. Meijer, Zeynep B. Erdem, Dina Ruano, Brendy E. van den Akker, Anne‐Marie Cleton‐Jansen, Jon Brugger, Inge H. Briaire‐de Bruijn, Claire H. J. Scholte, Michiel A. J. van de Sande, Felix Haglund de Flon, Daniel Baumhoer, Noel F. C. C. de Miranda, Judith V. M. G. Bovée   +15 more
wiley   +1 more source