Results 221 to 230 of about 152,624 (261)

Chromosome-level subgenome-aware de novo assembly provides insight into <i>Saccharomyces bayanus</i> genome divergence after hybridization. [PDF]

Genome Res
Gardner C, Chen J, Hadfield C, Lu Z, Debruin D, Zhan Y, Donlin MJ, Ahn TH, Lin Z.   +8 more
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Haplotype-resolved de novo assembly revealed unique characteristics of alternative lengthening of telomeres in mouse embryonic stem cells. [PDF]

Nucleic Acids Res
Lee H, Niida H, Sung S, Lee J.
europepmc   +1 more source

Complete de novo assembly and re-annotation of the zebrafish genome

Okendo J, Koren S, Rhie A, Torrado-Tapias A, Pickett BD, Brooks SY, Bouffard GG, Crawford JK, Sison C, Joardar VS, Murphy TD, Tierney JAS, Haggerty L, Martin FJ, Wilson C, Amores A, Postlethwait JH, Murphy J, Sakai N, Varga ZM, Phillippy AM, Burgess SM.   +21 more
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De novo assembly of Idesia polycarpa transcriptome and unsaturated fatty acid biosynthesis candidate genes Mining and functional Identification. [PDF]

Heliyon
Fan R, Wang B, Yu H, Wang Y, Kui Y, Chen M, Wang Y, Jia X.   +7 more
europepmc   +1 more source

De novo assembly and annotation of the Patagonian toothfish (Dissostichus eleginoides) genome. [PDF]

BMC Genomics
Ryder D, Stone D, Minardi D, Riley A, Avant J, Cross L, Soeffker M, Davidson D, Newman A, Thomson P, Darby C, van Aerle R.   +11 more
europepmc   +1 more source

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Using SPAdes De Novo Assembler

Current Protocols in Bioinformatics, 2020
AbstractSPAdes—St. Petersburg genome Assembler—was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates and for single‐cell genomic DNA sequencing. With time, the functionality of SPAdes was extended to enable assembly of IonTorrent data, as well as hybrid assembly from short and long reads ...
Andrey, Prjibelski, Dmitry, Antipov, Dmitry, Meleshko, Alla, Lapidus, Anton, Korobeynikov   +4 more
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Genovo: De Novo Assembly for Metagenomes

Journal of Computational Biology, 2010
Abstract Next-generation sequencing technologies produce a large number of noisy reads from the DNA in a sample. Metagenomics and population sequencing aim to recover the genomic sequences of the species in the sample, which could be of high diversity.
Jonathan Laserson, Vladimir Jojic, Daphne Koller   +2 more
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Practical evaluation of 11 de novo assemblers in metagenome assembly

Journal of Microbiological Methods, 2018
Next Generation Sequencing (NGS) technologies are revolutionizing the field of biology and metagenomic-based research. Since the volume of metagenomic data is typically very large, De novo metagenomic assembly can be effectively used to reduce the total amount of data and enhance quality of downstream analysis, such as annotation and binning. Although,
Esmaeil Forouzan, Parvin Shariati, Masoumeh Sadat Mousavi Maleki, Ali Asghar Karkhane, Bagher Yakhchali   +4 more
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De Novo Assembly Algorithms

2013
In an ideal case, an assembly algorithm should merge overlapped reads to one long continuous sequence, called contig, which is a chromosome in the primitive genome. But due to sequencing errors and the existence of unsequenced parts, contigs gained from the assembly algorithm are not complete enough to form chromosomes.
Ali Masoudi-Nejad, Zahra Narimani, Nazanin Hosseinkhan   +2 more
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De novo assembly of a Chinese soybean genome

Science China Life Sciences, 2018
Soybean was domesticated in China and has become one of the most important oilseed crops. Due to bottlenecks in their introduction and dissemination, soybeans from different geographic areas exhibit extensive genetic diversity. Asia is the largest soybean market; therefore, a high-quality soybean reference genome from this area is critical for soybean ...
Yanting, Shen, Jing, Liu, Haiying, Geng, Jixiang, Zhang, Yucheng, Liu, Haikuan, Zhang, Shilai, Xing, Jianchang, Du, Shisong, Ma, Zhixi, Tian   +9 more
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