Results 131 to 140 of about 5,011,430 (289)

On realization graphs of degree sequences

Discrete Mathematics, 2016
Given the degree sequence $d$ of a graph, the realization graph of $d$ is the graph having as its vertices the labeled realizations of $d$, with two vertices adjacent if one realization may be obtained from the other via an edge-switching operation.
openaire   +5 more sources

Ligand‐dependent transcriptional heterogeneity in cell cycle gene expression delays G1/S entry

FEBS Letters, EarlyView.
EGF and HRG induce distinct G1/S progression programs in ErbB2‐amplified BT474 breast cancer cells. Despite activating the potent ErbB2–ErbB3 heterodimer, HRG does not accelerate cell‐cycle entry. Instead, EGF promotes earlier restriction‐point passage via ERK–FOS signaling, whereas HRG activates the AKT–MYC axis, driving transcriptional heterogeneity ...
Ririn Rahmala Febri, Ayaka Nagasato‐Ichikawa, Keita Iida, Shuhei Kimura, Akira Imamoto, Mariko Okada   +5 more
wiley   +1 more source

New Results on Graph Matching from Degree-Preserving Growth

Mathematics
The recently introduced model in S. R. Kharel et al.’s study [Degree-preserving network growth. Nature Physics 2022, 18, 100–106] uses matchings to insert new vertices of prescribed degrees into the current graph of an ever-growing graph sequence.
Péter L. Erdős, Shubha R. Kharel, Tamás Róbert Mezei, Zoltán Toroczkai   +3 more
doaj   +1 more source

The Bipartite-Splittance of a Bipartite Graph

Discussiones Mathematicae Graph Theory, 2019
A bipartite-split graph is a bipartite graph whose vertex set can be partitioned into a complete bipartite set and an independent set. The bipartite- splittance of an arbitrary bipartite graph is the minimum number of edges to be added or removed in ...
Yin Jian-Hua, Guan Jing-Xin
doaj   +1 more source

Emerging experimental and computational methods for studying redox‐regulated structural transitions

FEBS Letters, EarlyView.
Redox reactions can reshape proteins and alter how they behave in cells, with important consequences for health and disease. This review explores emerging experimental and computational approaches for discovering these redox‐sensitive protein switches, revealing their structural effects, and predicting their behavior, opening new opportunities to ...
Tasneem Rass, Dana Reichmann, Gábor Erdős   +2 more
wiley   +1 more source

Synergistic perspectives—How single‐molecule biophysics complement biochemical understanding

FEBS Letters, EarlyView.
In this review, we discuss how ensemble biochemistry and single‐molecule approaches are complementary, outline commonly used single‐molecule techniques, and illustrate their relevance through two representative case studies: chromatin organization by SMC complexes and pathway choice during DNA double‐strand break repair.
Sara De Bragança, Eline L. Jansen, Jorine M. Eeftens   +2 more
wiley   +1 more source

Cover time of a random graph with given degree sequence

, 2010
In this paper we establish the cover time of a random graph $G(\textbf{d})$ chosen uniformly at random from the set of graphs with vertex set $[n]$ and degree sequence $\textbf{d}$.
Cooper, Colin, Abdullah, Mohammed, Frieze, Alan   +2 more
core   +2 more sources

Functional comparison of EncB and EncC cargo proteins in iron storage within the Myxococcus xanthus encapsulin

FEBS Letters, EarlyView.
Encapsulins are protein nanocompartments that play an important role in iron storage. In the Myxococcus xanthus encapsulin system, two cargo proteins called EncB and EncC contribute to iron mineralization. Here, we show that EncB and EncC generate iron‐containing minerals with distinct chemical compositions, suggesting that the composition of stored ...
Harry B. McDowell, Thomas Walther, Egbert Hoiczyk   +2 more
wiley   +1 more source

‘Guide and Prejudice’— How Argonautes recognize targets across domains of life

FEBS Letters, EarlyView.
Argonaute proteins use short nucleic‐acid guides to locate and regulate specific targets across all domains of life. Despite striking diversity—from human gene silencing to bacterial immune defence—all Argonautes share a conserved three‐stage recognition logic: guide‐directed sampling, progressive target pairing with a conformational checkpoint and ...
Jack P. K. Bravo
wiley   +1 more source

Sparse Trees with a Given Degree Sequence [PDF]

, 2018
In this thesis, we consider the properties of sparse trees and summarized a certain class of trees under some constraint (including with a given degree sequence, with given number of leaves, with given maximum degree, etc.) which have maximum Wiener ...
Shen, Ao
core