Roles of Organohalide-Respiring Dehalococcoidia in Carbon Cycling
MSystems, 2020 The class Dehalococcoidia within the Chloroflexi phylum comprises the obligate organohalide-respiring genera Dehalococcoides, Dehalogenimonas, and “Candidatus Dehalobium.” Knowledge of the unique ecophysiology and biochemistry of Dehalococcoidia has been
Yi Yang, Robert A Sanford, Jun Yan
exaly +7 more sources
Genomic Characteristics Distinguish Geographically Distributed Dehalococcoidia [PDF]
Frontiers in Microbiology, 2020 Dehalococcoidia (Dia) class microorganisms are frequently found in various pristine and contaminated environments. Metagenome-assembled genomes (MAGs) and single-cell amplified genomes (SAGs) studies have substantially improved the understanding of Dia ...
Yi Yang, Natalie L Cápiro, Jun Yan
exaly +5 more sources
Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes [PDF]
PLoS ONE, 2016 Here we describe the natural occurrence of bacteria of the class Dehalococcoidia (DEH) and their diversity at different depths in anoxic waters of a remote meromictic lake (Lake Pavin) using 16S rRNA gene amplicon sequencing and quantitative PCR ...
Corinne Biderre-Petit +2 more
exaly +7 more sources
Anaerobic degradation of organic carbon supports uncultured microbial populations in estuarine sediments [PDF]
Microbiome, 2023 Background A large proportion of prokaryotic microbes in marine sediments remains uncultured, hindering our understanding of their ecological functions and metabolic features.
Tiantian Yu, Weichao Wu, Yinzhao Wang
exaly +3 more sources
Taxonomic Re-Classification and Expansion of the Phylum Chloroflexota Based on over 5000 Genomes and Metagenome-Assembled Genomes [PDF]
Microorganisms, 2023 The phylum Chloroflexota (formerly Chloroflexi) encompasses metabolically diverse bacteria that often have high prevalence in terrestrial and aquatic habitats, some even with biotechnological application.
Sandra Wiegand +7 more
doaj +2 more sources
Potential for the anaerobic oxidation of benzene and naphthalene in thermophilic microorganisms from the Guaymas Basin [PDF]
Frontiers in Microbiology, 2023 Unsubstituted aromatic hydrocarbons (UAHs) are recalcitrant molecules abundant in crude oil, which is accumulated in subsurface reservoirs and occasionally enters the marine environment through natural seepage or human-caused spillage.
Hanna Zehnle +7 more
doaj +2 more sources
35 metagenomic datasets from the northern and southern parts of the Yap trench sediments [PDF]
Scientific DataThe hadal trench is the deepest part of the global ocean and harbors highly abundant microbial cells. However, the diversity and function of the majority of microbial communities in this part of the ocean are still unclear.
Mingyang Niu +7 more
doaj +2 more sources
Geochemical variability and microbial metabolic functions in oligotrophic sediments exposed to minor seepage [PDF]
Frontiers in MicrobiologyLow primary productivity in Barents Sea surface waters and limited nutrient flux to the seafloor favor nitrification and nitrogen fixation in deep waters, resulting in a dearth of organic substrates in local sediments. The addition of labile hydrocarbons
Ellen Schnabel +13 more
doaj +2 more sources
Distribution and Variation Characteristics of Branched Glycerol Dialkyl Glycerol Tetraethers (BrGDGTs) in Sediment Cores Along the Nearshore-to-Offshore Gradient of the East China Sea and Their Correlation with Microbial Community Diversity [PDF]
BiologyBranched glycerol dialkyl glycerol tetraethers (brGDGTs) are promising molecular biomarkers widely applied in paleoenvironmental reconstructions, including temperature and pH.
Ting Zeng +4 more
doaj +2 more sources
The chromosomal genome sequence of the sponge, Corticium candelabrum Schmidt, 1862 and its associated microbial metagenome sequences [version 1; peer review: 3 approved] [PDF]
Wellcome Open ResearchWe present a genome assembly from a specimen of Corticium candelabrum (sponge; Porifera; Homoscleromorpha; Homosclerophorida; Plakinidae). The genome sequence has a total length of 185.49 megabases.
Eerik Aunin +12 more
doaj +2 more sources