Results 161 to 170 of about 19,711 (309)

Barbell reveals and resolves demultiplexing and trimming issues in Nanopore data. [PDF]

Bioinformatics
Beeloo R, Groot Koerkamp R, Jia X, Broekhuizen-Stins MJ, van IJken L, Broens EM, Zomer A, Dutilh BE.   +7 more
europepmc   +1 more source

Synergistic Benefits of Butyric Acid and Resistant Potato Starch on Growth and Gut Health in Weaned Pigs

Journal of Animal Physiology and Animal Nutrition, EarlyView.
ABSTRACT Newly‐weaned piglets face challenges such as reduced feed intake, impaired gut function, and susceptibility to post‐weaning diarrhoea, increasing the need for dietary strategies that support gut health and growth. This study investigated the effects of dietary supplementation with butyric acid (BA), resistant potato starch (PS), and their ...
Kathryn Ruth Connolly, Torres Sweeney, John V. O'Doherty   +2 more
wiley   +1 more source

ADAM-tRNA-seq: an optimized approach for demultiplexing and enhanced hierarchal mapping in direct tRNA sequencing. [PDF]

Nucleic Acids Res
Alarcon R, Köster D, Behrmann S, Ignatova Z.   +3 more
europepmc   +1 more source

Impact of the invasive diatom species Cymbella janischii on riverine microbial biofilm communities and a potential role of bacterially produced zeatin

Journal of Phycology, EarlyView.
Abstract The diatom Cymbella janischii is an invasive species in Japan, causing nuisance blooms by forming thick mats in rivers. To date, there are no documented studies on the microbiome associations in C. janischii mats or the processes that drive bloom formation.
Eldrin D. L. R. Arguelles, Kana Mugikura, Shinya Sato   +2 more
wiley   +1 more source

Souporcell3: robust demultiplexing for high-donor single-cell RNA-seq datasets. [PDF]

Bioinformatics
Weerakoon M, Vu H, Behboudi R, Heaton H.
europepmc   +1 more source

Integrating Megabarcoding and Metabarcoding to Unlock Diversity and Distribution Data Shortfalls in Dark Taxa. [PDF]

Mol Ecol Resour
ABSTRACT Persistent biodiversity data shortfalls undermine our capacity to detect species, map their distributions and characterize their spatial genetic structure, limiting robust biogeographic analyses and the development of effective conservation strategies.
Santos-Perdomo I, Salces-Castellano A, Moraza ML, Mateos E, Muñoz-Barrera A, González-Montelongo R, Suárez D, Vega-Pita N, Falcón-López L, Lorenzo-Salazar JM, Flores C, Arribas P, Andújar C.   +12 more
europepmc   +2 more sources

Pharmacokinetics of Long‐Acting Ampicillin and Its Impact on the Gut Microbiome and Resistome in Rhesus Macaques (Macaca mulatta)

Journal of Veterinary Pharmacology and Therapeutics, EarlyView.
ABSTRACT Injectable antimicrobials with documented prolonged dosing intervals (> 48 h) for use in rhesus macaques are sparse. The objective of our study was to assess the pharmacokinetics, urine excretion, and effects on gut microbiome and resistome of intramuscular administered long‐acting formulation of ampicillin (Albipen LA) in macaques.
Annemiek Maaskant, Ingeborg M. van Geijlswijk, Mathias Devreese, Marc Cherlet, Leo F. van Geest, Jaap A. Wagenaar, Jan A. M. Langermans, Aldert L. Zomer, Jaco Bakker, Ronette Gehring   +9 more
wiley   +1 more source

A Scalable and Cost-Effective In-Line Barcoding Strategy for Standardized 16S rRNA Gene Amplicon Sequencing: Performance Evaluation and Bias Assessment. [PDF]

Mol Ecol Resour
Jourdain L, Rossi P, Charpagne A, Chevalier E, Praz V, Marquis J, Weber J, Gu W.   +7 more
europepmc   +1 more source

Regulation of the Yersinia pseudotuberculosis Type III Secretion System by the CpxAR Two‐Component System

Molecular Microbiology, EarlyView.
Host tissue cues including temperature, oxygen, and iron availability regulate expression of the Yersinia type III secretion system (T3SS) master regulator LcrF. We found that CpxR inhibits LcrF through an indirect, multi‐factorial mechanism and identified the osmolarity‐sensing OmpR/EnvZ system as an additional regulator of LcrF, highlighting ...
Karen Hug, Erin Mettert, Melissa Estrada Escobar, Cristina Vargas Vazquez, David Balderas, Sarvind Tripathi, Laya Ashley, Patricia J. Kiley, Victoria Auerbuch   +8 more
wiley   +1 more source

Fast, Flexible, Feasible: A Transparent Framework for Evaluating eDNA Workflow Trade-Offs in Resource-Limited Settings. [PDF]

Mol Ecol Resour
Ip YCA, Allan EA, Hirsch SL, Kelly RP.
europepmc   +1 more source