Results 221 to 230 of about 19,711 (309)

pr2‐Wormifier: A Bioinformatics Pipeline to Create Custom Reference Databases for Improved Metabarcoding of Marine Protists

Molecular Ecology Resources, Volume 26, Issue 5, July 2026.
ABSTRACT Metabarcoding of environmental and ancient environmental DNA (eDNA and sedaDNA) is a powerful approach for studying and monitoring marine communities. However, its effectiveness is limited by the availability of comprehensive and well‐curated reference databases, particularly for protists.
Stefanie Knell, Juliane Romahn, Miklós Bálint   +2 more
wiley   +1 more source

Rapid and accurate demultiplexing of direct RNA nanopore sequencing data with SeqTagger. [PDF]

Genome Res
Pryszcz LP, Diensthuber G, Llovera L, Medina R, Delgado-Tejedor A, Cozzuto L, Ponomarenko J, Novoa EM.   +7 more
europepmc   +1 more source

A Practical Framework for GT‐Seq Panel Optimization

Molecular Ecology Resources, Volume 26, Issue 5, July 2026.
ABSTRACT Genotyping‐in‐thousands by sequencing (GT‐seq) panels are powerful tools in ecological, evolutionary and conservation genomics, yet the optimization process critical for robust and reproducible genotyping remains poorly formalized. Here, we present an iterative workflow for GT‐seq panel optimization that emphasizes systematic refinement ...
Chandika RG, Caitlin N. Ott‐Conn, Peter T. Euclide, Julie A. Blanchong, Angela Schmoldt, Randy W. DeYoung, Daniel P. Walsh, Wes A. Larson, Emily K. Latch   +8 more
wiley   +1 more source

Comparison of Environmental DNA and Bulk DNA Metabarcoding for Assessing Terrestrial Arthropod Diversity Across Three Habitat Types on Guam

Molecular Ecology Resources, Volume 26, Issue 5, July 2026.
ABSTRACT DNA‐based methods offer a rapid and cost‐effective way for detecting species occurrence and monitoring biodiversity; among them, bulk DNA metabarcoding is well‐established, and recently developed environmental DNA (eDNA)‐based methods offer a non‐lethal alternative.
Pritam Banerjee, Samantha Al‐Bayer, Jerilyn Calaor, Sven Weber, Natalie R. Graham, Jeremy C. Andersen, Evan P. Economo, Susan Kennedy, Henrik Krehenwinkel, Rosemary G. Gillespie, George K. Roderick, Haldre S. Rogers, Kenneth P. Puliafico   +12 more
wiley   +1 more source

Draft genome sequence of <i>Kluyveromyces marxianus</i> MCHA. [PDF]

Microbiol Resour Announc
Ibarra-Rivera G, Muñoz-Miranda LA, Pereira-Santana A, Arellano-Plaza M, Gschaedler-Mathis A, Kirchmayr MR, Figueroa-Yañez LJ.   +6 more
europepmc   +1 more source

Filtration of airborne eDNA outperforms leaf swabs for terrestrial vertebrate detection in a temperate mixed forest with longer filtration times performing the best

Methods in Ecology and Evolution, Volume 17, Issue 7, Page 2149-2160, July 2026.
Abstract Advances in collection of environmental DNA (eDNA) through active air filtration and sampling from vegetation (leaf swabs) have demonstrated the promise of using airborne eDNA for terrestrial vertebrate surveys. However, methods are at an early stage, and we lack insights into the effect of air filtration time and the complementarity between ...
Kasun H. Bodawatta, Agnete l. M. Madsen, Christina Lynggaard, Kristine Bohmann   +3 more
wiley   +1 more source

Pantheon-DNA: Versatile encoding-decoding system with integrated adaptive NGS preprocessing algorithms for DNA data storage. [PDF]

Comput Struct Biotechnol J
Leal AG, Aoyagi TY, Costa-Martins AG, de Souza DT, da Silva CMF, Ueda ET, Parada MGO, Feitosa AE, Fujita A.   +8 more
europepmc   +1 more source

Addressing false negatives and positives in eDNA studies

Methods in Ecology and Evolution, Volume 17, Issue 7, Page 1977-2008, July 2026.
Abstract Environmental DNA (eDNA) has revolutionized the study of ecology and biodiversity, enabling species detection without direct observation in the environment. However, the implications of detection errors, specifically false positives and false negatives, are poorly reported in eDNA studies, significantly hindering our understanding of the ...
Amal Bajaffer, Lutfi Afiq‐Rosli, Kah Kheng Lim, Sofia Frappi, Michelle‐Nicole Havlik, Diego E. Rivera Rosas, Elisa Laiolo, Carlos Angulo‐Preckler, Carlos M. Duarte   +8 more
wiley   +1 more source

Complete genome sequence of <i>Geobacillus stearothermophilus</i> strain CS7089 isolated from a commercial agar preparation. [PDF]

Microbiol Resour Announc
Maffei E, Ransome J, Saez C, Loessner MJ, Harms A.   +4 more
europepmc   +1 more source

A highly abundant circular RNA from the RMST locus plays a role in posterior fossa ependymoma pathogenesis

Brain Pathology, Volume 36, Issue 4, July 2026.
circRMST (hsa_circ_0099634) is by far the most abundant isoform from the RMST locus. It is highly expressed in cancer cells throughout ependymoma patient samples and is located in the cytoplasm. circRMST knockdown causes cell cycle arrest and induces differentiation, and it is a marker for poor prognosis. The figure is made using BioRender.
Ulvi Ahmadov, Charlotte W. Udengaard, Stine M. Vissing, Silke D. Nielsen, Kim‐Gwendolyn Dietrich, Benedicte Parm Ulhøi, Lasse S. Kristensen   +6 more
wiley   +1 more source