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Evaluating dimensionality reduction for genomic prediction [PDF]

open access: yesFrontiers in Genetics, 2022
The development of genomic selection (GS) methods has allowed plant breeding programs to select favorable lines using genomic data before performing field trials.
Vamsi Manthena   +8 more
doaj   +2 more sources

Supersymmetry Breaking by Dimensional Reduction over Coset Spaces [PDF]

open access: greenPhys.Lett.B504:122-130,2001, 2000
We study the dimensional reduction of a ten-dimensional supersymmetric E_8 gauge theory over six-dimensional coset spaces. We find that the coset space dimensional reduction over a symmetric coset space leaves the four dimensional gauge theory without any track of the original supersymmetry.
P. Manousselis, George Zoupanos
arxiv   +3 more sources

Exploring the Influence of Dimensionality Reduction on Anomaly Detection Performance in Multivariate Time Series [PDF]

open access: yesIEEE Access
This paper presents an extensive empirical study on the integration of dimensionality reduction techniques with advanced unsupervised time series anomaly detection models, focusing on the MUTANT and Anomaly-Transformer models.
Mahsun Altin, Altan Cakir
doaj   +2 more sources

Dimensionality Reduction: Challenges and Solutions [PDF]

open access: yesITM Web of Conferences, 2022
The use of dimensionality reduction techniques is a keystone for analyzing and interpreting high dimensional data. These techniques gather several data features of interest, such as dynamical structure, input-output relationships, the correlation between
Ahmad Noor, Nassif Ali Bou
doaj   +1 more source

Non-negative Matrix Factorization for Dimensionality Reduction [PDF]

open access: yesITM Web of Conferences, 2022
—What matrix factorization methods do is reduce the dimensionality of the data without losing any important information. In this work, we present the Non-negative Matrix Factorization (NMF) method, focusing on its advantages concerning other methods of ...
Olaya Jbari, Otman Chakkor
doaj   +1 more source

Shape-aware stochastic neighbor embedding for robust data visualisations

open access: yesBMC Bioinformatics, 2022
Background The t-distributed Stochastic Neighbor Embedding (t-SNE) algorithm has emerged as one of the leading methods for visualising high-dimensional (HD) data in a wide variety of fields, especially for revealing cluster structure in HD single-cell ...
Tobias Wängberg   +2 more
doaj   +1 more source

Dimensionality reduction using singular vectors

open access: yesScientific Reports, 2021
A common problem in machine learning and pattern recognition is the process of identifying the most relevant features, specifically in dealing with high-dimensional datasets in bioinformatics.
Majid Afshar, Hamid Usefi
doaj   +1 more source

Dimensionality reduction in Bayesian estimation algorithms [PDF]

open access: yesAtmospheric Measurement Techniques, 2013
An idealized synthetic database loosely resembling 3-channel passive microwave observations of precipitation against a variable background is employed to examine the performance of a conventional Bayesian retrieval algorithm.
G. W. Petty
doaj   +1 more source

Supervised dimensionality reduction for big data

open access: yesNature Communications, 2021
Biomedical measurements usually generate high-dimensional data where individual samples are classified in several categories. Vogelstein et al. propose a supervised dimensionality reduction method which estimates the low-dimensional data projection for ...
Joshua T. Vogelstein   +6 more
doaj   +1 more source

Haisu: Hierarchically supervised nonlinear dimensionality reduction.

open access: yesPLoS Computational Biology, 2022
We propose a novel strategy for incorporating hierarchical supervised label information into nonlinear dimensionality reduction techniques. Specifically, we extend t-SNE, UMAP, and PHATE to include known or predicted class labels and demonstrate the ...
Kevin Christopher VanHorn   +1 more
doaj   +1 more source

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