Results 181 to 190 of about 171,193 (280)

PlantCTCIP: Chromatin Interaction Prediction Using Convolutional Neural Network and Transformer in Plants

Plant Biotechnology Journal, EarlyView.
ABSTRACT Chromatin interactions establish spatial proximity between distant regulatory elements and their target genes, significantly influencing gene expression, and phenotypic traits. In this study, we present a plant chromatin interaction prediction model called PlantCTCIP based on Convolutional Neural Networks and Transformer.
Zhenye Wang, Siyu Zhou, Ze Guo, Zilan Ning, Jiaqi Cai, Ran Zhao, Ao Xie, Quan Li, Jiangling Zhang, Yongsheng Zhao, Peizhang Li, Haiping Si, Jianbing Yan, Yong Peng, Jianxiao Liu   +14 more
wiley   +1 more source

Protocol for extracting intergenic regions from annotated genomes using TIGRE. [PDF]

STAR Protoc
Dupin B, Sanita Lima M, Paschoal AR, Smith DR.   +3 more
europepmc   +1 more source

Dynamic Landscapes of Long Noncoding RNAs During Early Root Development and Differentiation in Glycine max and Glycine soja

Plant, Cell &Environment, EarlyView.
ABSTRACT Soybean (Glycine max) is an important crop for its nutritional value. Its wild relative, Glycine soja, provides a valuable genetic resource for improving soybean productivity. Root development and differentiation are essential for soybean plants to take up water and nutrients, store energy and anchor themselves.
Qiaoxia Liang, Hafiz M. Rehman, Jizhou Zhang, Hon‐Ming Lam, Ting‐Fung Chan   +4 more
wiley   +1 more source

Influence of DNA methylation and chromatin accessibility on regulation of gene expression during <i>Trichomonas vaginalis-</i>host cell interaction. [PDF]

mBio
Muñoz D, Lizarraga A, Johnson PJ, Strobl-Mazzulla PH, de Miguel N.   +4 more
europepmc   +1 more source

New Integrative Vectors Increase Agrobacterium rhizogenes Transformation and Help Characterise Roles for Soybean GmTML Gene Family Members

Plant, Cell &Environment, EarlyView.
ABSTRACT Hairy‐root transformation is widely used to generate transgenic plant roots for genetic functional characterisation studies. However, transformation efficiency can be limited, largely due to the use of binary vectors. Here, we report on the development of novel integrative vectors that significantly increase the transformation efficiency of ...
Huanan Su, Mengbai Zhang, Estelle B. Grundy, Brett J. Ferguson   +3 more
wiley   +1 more source

Association between GRIK1 rs363598 and intergenic rs360932 variants and susceptibility to autism spectrum disorders in Egyptian children. [PDF]

BMC Pediatr
Bassiony H, Baiomy A, Ahmed D, Elaraby NM, Ammar THA, Ashaat EA.   +5 more
europepmc   +1 more source

Assessing the adaptive potential of European beech populations to temperature and precipitation along a steep environmental gradient in the south‐eastern Carpathians

Plant Biology, EarlyView.
This study focuses on the identification of candidate SNPs involved in local adaptation to altitude by environmental association analysis conducted on different natural European beech (Fagus sylvatica) populations. Abstract It is necessary to assess the adaptive potential of European beech populations to climate change.
M. Tost, O. Grigoriadou‐Zormpa, S. Wilhelmi, M. Müller, H. Wildhagen, A. L. Curtu, O. Gailing   +6 more
wiley   +1 more source

Illuminating the FGFR fusion landscape in Chinese patients: unveiling novel molecular insights and clinical implications. [PDF]

Oncologist
Liu Z, Zhao D, Wang B, Qian Z, Liu Z, Yang Q, Tao J, Shao Y, Lv M, Zhang Y, Zhu J, Zhang J, Li W, Wang X, Wang C, Ma T, Zhu Y.   +16 more
europepmc   +1 more source

Tolerability and Feasibility of Minimally Invasive Canine Skin Sampling: Excellent Tolerability Meets Transcriptomic Challenges

Veterinary Dermatology, EarlyView.
ABSTRACT Background Advances in transcriptomics have driven the demand for minimally invasive, reproducible and high‐yield skin sampling methods, particularly for studying inflammatory skin diseases in companion animals. Hypothesis/Objectives We tested tolerability, feasibility and RNA quantity and quality of three minimally invasive skin sampling ...
Ina Herrmann, Lisa B. Mamo, Allison N. Dickey   +2 more
wiley   +1 more source

H3K4me3 amplifies transcription at intergenic active regulatory elements. [PDF]

Genes Dev
Yu H, Zhang Y, Liao Z, Walters BW, Lesch BJ.   +4 more
europepmc   +1 more source