Results 61 to 70 of about 28,236 (304)

Arbuscular mycorrhizal fungal community abundance, functions, and symbiotic interactions revealed by root metatranscriptomes

open access: yesiMetaOmics, EarlyView.
Paradigm shift: PCR‐free methods reveal 6–15‐fold higher arbuscular mycorrhizal (AM) fungal abundance than metabarcoding, exposing systematic underestimation across decades of research. Predictive power: AM fungal abundance serves as a community‐level trait that predicts crop yield under drought conditions.
Peilin Chen, John W. Taylor, Cheng Gao
wiley   +1 more source

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples [PDF]

open access: yes, 2018
Advances in the sequencing of DNA extracted from media such as soil and water offer huge opportunities for biodiversity monitoring and assessment, particularly where the collection or identification of whole organisms is impractical.
Banks, Jonathan C.   +17 more
core   +3 more sources

Diatom metabarcoding and microscopic analyses from sediment samples at Lake Nam Co, Tibet: The effect of sample-size and bioinformatics on the identified communities

open access: yesEcological Indicators, 2021
Diatoms (Bacillariophyceae) are characterized by silicified cell walls that favor their long-term preservation in sediments, therefore widely used as bioindicators of present and past water conditions.
Wengang Kang   +10 more
doaj   +1 more source

Hippocampus guttulatus diet based on DNA metabarcoding

open access: yesFrontiers in Marine Science, 2023
Seahorses are small sedentary fish considered flagship species of the conservation efforts. They are particularly vulnerable to human pressures because inhabiting threatened coastal ecosystems. Indeed, the worldwide decline of local populations in the last decades led to the inclusion of all seahorse species on the IUCN Red List, where most species ...
Lazic Tamara   +11 more
openaire   +3 more sources

Selecting Promising Soil Quality Indicators for Monitoring Soil Management Effects Based on 10 European Long‐Term Field Experiments

open access: yesJournal of Plant Nutrition and Soil Science, EarlyView.
ABSTRACT Background: Soil quality can be measured through soil quality indicators that reflect soil processes. Aim: The aim of this study was to (1) identify a limited set of soil quality indicators that are most sensitive to agricultural soil management and that are widely applicable regardless of pedo‐climatic conditions, and (2) link common ...
Giulia Bongiorno   +14 more
wiley   +1 more source

DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities [PDF]

open access: yes, 2017
Morphology-based profling of benthic communities has been extensively applied to aquatic ecosystems’ health assessment. However, it remains a low-throughput, and sometimes ambiguous, procedure.
Costa, Filipe O.   +4 more
core   +2 more sources

Comparative analysis of fungal microbiomes in Korean and Chinese chili pepper powders

open access: yesJournal of the Science of Food and Agriculture, EarlyView.
Abstract BACKGROUND Chili pepper powder plays a crucial role in kimchi fermentation; however, its use may result in fungal contamination. Therefore, analyzing its mycobiome is vital to maintain quality control standards. In this study, we used internal transcribed spacer (ITS)2 amplicon sequencing to compare fungal communities in commercially available
Jin‐Hee Seo   +4 more
wiley   +1 more source

Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status [PDF]

open access: yes, 2017
Danovaro, Roberto ... et al.-- 25 pages, 9 figures, 2 tablesMarine environmental monitoring has tended to focus on site-specific methods of investigation.
Borja, Ángel   +5 more
core   +1 more source

Underground Lag: Fungal Community and Edaphic Legacies After Disturbance

open access: yesLand Degradation &Development, EarlyView.
ABSTRACT Páramos are neotropical mountain ecosystems that regulate water and store large amounts of carbon, but are increasingly degraded by agriculture and grazing. Although native vegetation often recolonizes after abandonment, belowground recovery remains poorly understood.
Wilmer Dajhan Navarrete‐López   +6 more
wiley   +1 more source

Molecular metrics to monitor ecological status of large rivers: Implementation of diatom DNA metabarcoding in the Joint Danube Survey 4

open access: yesEcological Indicators
The Joint Danube Survey (JDS) is a regular transnational survey to monitor the quality of the Danube and its main tributaries, in accordance with the EU Water Framework Directive.
Kálmán Tapolczai   +6 more
doaj   +1 more source

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