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Predicting Drug-Target Interaction Using a Novel Graph Neural Network with 3D Structure-Embedded Graph Representation

Journal of Chemical Information and Modeling, 2019
We propose a novel deep learning approach for predicting drug-target interaction using a graph neural network. We introduce a distance-aware graph attention algorithm to differentiate various types of intermolecular interactions.
Jaechang Lim   +5 more
semanticscholar   +1 more source

Predicting Drug-Target Interaction Via Self-Supervised Learning

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2023
Recent advances in graph representation learning provide new opportunities for computational drug-target interaction (DTI) prediction. However, it still suffers from deficiencies of dependence on manual labels and vulnerability to attacks. Inspired by the success of self-supervised learning (SSL) algorithms, which can leverage input data itself as ...
Jiatao Chen   +5 more
openaire   +2 more sources

GSL-DTI: Graph Structure Learning Network for Drug-Target Interaction Prediction.

Methods
MOTIVATION Drug-target interaction prediction is an important area of research to predict whether there is an interaction between a drug molecule and its target protein.
Z. E., Guanyu Qiao, Guohua Wang, Yang Li
semanticscholar   +1 more source

Multi-View Drug Target Interaction Prediction

2021
, (Drug-Target Interaction DTI).
openaire   +1 more source

Machine learning in drug-target interaction prediction: current state and future directions.

Drug Discovery Today, 2020
Predicting the strength of binding affinity between compounds and proteins with reasonable accuracy is crucial in drug discovery. Computational prediction of binding affinity between compounds and targets greatly enhances the probability of finding lead ...
Sofia D'souza, P. K. V., Balaji S
semanticscholar   +1 more source

Characterizing Drug–Target Interactions: Shifting towards the Clinic

Trends in Pharmacological Sciences, 2020
Recently, Perrin et al. reported the application of thermal proteome profiling (TPP), a cellular thermal shift assay with an unbiased proteomics readout to complex tissue samples from model organisms and patient-derived whole blood. This study demonstrates for the first time that TPP enables organ-specific drug target engagement and identification ...
openaire   +2 more sources

Protein-Protein Interactions as Drug Targets

2012
Over the last two decades, a number of protein-protein interactions (PPIs) have been targeted by the pharmaceutical industry. Pharma as a whole has historically considered PPIs to be undruggable or at the very least high-risk targets, and the relative lack of success in modulating PPIs with small molecules has done little to change this prevailing view.
openaire   +1 more source

Inferring Chemogenomic Features from Drug‐Target Interaction Networks

Molecular Informatics, 2013
AbstractDrug effects are mainly caused by the interactions between drug molecules and target proteins including primary targets and off‐targets. Understanding of the molecular mechanisms behind overall drugtarget interactions is crucial in the drug design process.
openaire   +2 more sources

Drug-Target Interaction Prediction with PIGLET

bioRxiv
Drug-target interaction (DTI) prediction is a key task for computed-aided drug development that has been widely approached by deep learning models.
K. A. Carpenter, R. Altman
semanticscholar   +1 more source

Supervised graph co-contrastive learning for drug-target interaction prediction

Bioinform., 2022
Yang Li   +3 more
semanticscholar   +1 more source

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