Results 1 to 10 of about 139,067 (282)
Bayesian parameter estimation for dynamical models in systems biology. [PDF]
PLoS Computational Biology, 2022 Dynamical systems modeling, particularly via systems of ordinary differential equations, has been used to effectively capture the temporal behavior of different biochemical components in signal transduction networks.
Nathaniel J Linden +2 more
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PyRates-A code-generation tool for modeling dynamical systems in biology and beyond. [PDF]
PLoS Computational Biology, 2023 The mathematical study of real-world dynamical systems relies on models composed of differential equations. Numerical methods for solving and analyzing differential equation systems are essential when complex biological problems have to be studied, such ...
Richard Gast +2 more
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An Invitation to Quantum Channels [PDF]
Quanta, 2018 Open quantum systems have become an active area of research, owing to its potential applications in many different fields ranging from computation to biology.
Vinayak Jagadish, Francesco Petruccione
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Lessons learned from quantitative dynamical modeling in systems biology. [PDF]
PLoS ONE, 2013 Due to the high complexity of biological data it is difficult to disentangle cellular processes relying only on intuitive interpretation of measurements.
Andreas Raue +11 more
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Controlled vocabularies and semantics in systems biology [PDF]
Molecular Systems Biology, 2011 The use of computational modeling to describe and analyze biological systems is at the heart of systems biology. Model structures, simulation descriptions and numerical results can be encoded in structured formats, but there is an increasing need to ...
Mélanie Courtot +26 more
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Correction: Bayesian parameter estimation for dynamical models in systems biology.
PLoS Computational Biology, 2023 [This corrects the article DOI: 10.1371/journal.pcbi.1010651.].
Nathaniel J Linden +2 more
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Correction: Lessons Learned from Quantitative Dynamical Modeling in Systems Biology.
PLoS ONE, 2013 The fifth author's name was spelled incorrectly. The correct name is: Max Schelker. The corrected citation is: Raue A, Schilling M, Bachmann J, Matteson A, Schelker M, et al. (2013) Lessons Learned from Quantitative Dynamical Modeling in Systems Biology. PLoS ONE 8(9): e74335.
Andreas Raue +11 more
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Tellurium notebooks-An environment for reproducible dynamical modeling in systems biology.
PLoS Computational Biology, 2018 The considerable difficulty encountered in reproducing the results of published dynamical models limits validation, exploration and reuse of this increasingly large biomedical research resource.
J Kyle Medley +7 more
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Modular assembly of dynamic models in systems biology [PDF]
PLOS Computational Biology, 2021 It is widely acknowledged that the construction of large-scale dynamic models in systems biology requires complex modelling problems to be broken up into more manageable pieces. To this end, both modelling and software frameworks are required to enable modular modelling.
Michael Pan +3 more
openaire +5 more sources
Time-Optimal Adaptation in Metabolic Network Models
Frontiers in Molecular Biosciences, 2022 Analysis of metabolic models using constraint-based optimization has emerged as an important computational technique to elucidate and eventually predict cellular metabolism and growth.
Markus A. Köbis +2 more
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