Preliminary results of sediments eDNA metabarcoding along arctic fjord [PDF]
Ecosystems of arctic fjords are exposed to various natural and human-induced stressors that shape the taxonomic structure and functioning. Glacial activity and meltwater inflows together with advection of sea water masses from shelves form variety of environmental gradients that have been shown to influence marine biota.
Mikołaj Mazurkiewicz +3 more
openaire +2 more sources
Applications of next-generation sequencing technologies and computational tools in molecular evolution and aquatic animals conservation studies : a short review [PDF]
Aquatic ecosystems that form major biodiversity hotspots are critically threatened due to environmental and anthropogenic stressors. We believe that, in this genomic era, computational methods can be applied to promote aquatic biodiversity conservation ...
Afiqah-Aleng, Nor +8 more
core +1 more source
Merging DNA metabarcoding and ecological network analysis to understand and build resilient terrestrial ecosystems [PDF]
Summary 1. Significant advances in both mathematical and molecular approaches in ecology offer unprecedented opportunities to describe and understand ecosystem functioning.
Evans, Darren M. +6 more
core +3 more sources
The ability to properly identify species present in a landscape is foundational to ecology and essential for natural resource management and conservation.
Mary E. McElroy +19 more
doaj +1 more source
Unlocking foraminiferal genetic diversity on estuarine mudflats with eDNA metabarcoding
Environmental biomonitoring is a prerequisite for efficient evaluation and remediation of ecosystem degradation due to anthropogenic pressure or climate change. Estuaries are key habitats subject to multiple anthropogenic and natural stressors. Due to these multiple stressors, the detection of anthropogenic pressure is challenging.
Singer, David +5 more
openaire +3 more sources
Are we using eDNA metabarcoding to its full potential? [PDF]
Editorial.
Coscia, I, McDevitt, AD
openaire +1 more source
Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples [PDF]
Advances in the sequencing of DNA extracted from media such as soil and water offer huge opportunities for biodiversity monitoring and assessment, particularly where the collection or identification of whole organisms is impractical.
Banks, Jonathan C. +17 more
core +3 more sources
Aquatic eDNA sampling and plant metabarcoding (v0.0.1) v1 [PDF]
Aquatic eDNA sampling, extraction, and plant metabarcoding on Oxford Nanopore's Flongle platform. Sampling method adapted from: Laramie, M.B., Pilliod, D.S., Goldberg, C.S. and Strickler, K.M., 2015. Environmental DNA sampling protocol-filtering water to capture DNA from aquatic organisms (No. 2-A13). US Geological Survey.
Jordan Callahan, Robert Harbert
openaire +1 more source
101 lakes - lentic fish community monitoring using eDNA metabarcoding [PDF]
We have recently developed and deployed methods for environmental DNA (eDNA) based monitoring of lake fish communities in the UK. This approach combines eDNA with modern High-Throughput-Sequencing technology, so-called eDNA metabarcoding. This non-invasive method has proven to be more effective at detecting elusive species than established invasive ...
Hänfling,Bernd +3 more
openaire +1 more source
The use of environmental DNA (eDNA) methods for community analysis has recently been developed. High-throughput parallel DNA sequencing (HTS), called eDNA metabarcoding, has been increasingly used in eDNA studies to examine multiple species.
Kazuya Fujii +5 more
doaj +1 more source

