Results 61 to 70 of about 8,215,537 (203)

Temporal patterns of gene expression via nonmetric multidimensional scaling analysis

, 2003
Motivation: Microarray experiments result in large scale data sets that require extensive mining and refining to extract useful information. We have been developing an efficient novel algorithm for nonmetric multidimensional scaling (nMDS) analysis for ...
Cho, Eisen, Iyer, Johansson, Kanaya, Kasturi, Shmulevich, Spellman, Y. Oono, Y.-h. Taguchi   +9 more
core   +2 more sources

Deep generative modeling for single-cell transcriptomics. [PDF]

, 2018
Single-cell transcriptome measurements can reveal unexplored biological diversity, but they suffer from technical noise and bias that must be modeled to account for the resulting uncertainty in downstream analyses.
A Regev, A Tanay, A Wagner, A Zeisel, AP Patel, B Wang, BK Tusi, CA Vallejos, CA Vallejos, D DeTomaso, D Grün, D Risso, DM Blei, E Pierson, FA Wolf, G Finak, G Görgün, GXY Zheng, HI Nakaya, J Ding, J Fan, Jeffrey Regier, JT Gaublomme, K Shekhar, L Haghverdi, L Held, M Stoeckius, MD Robinson, MI Love, Michael B. Cole, Michael I. Jordan, Nir Yosef, PV Kharchenko, Q Li, RE Kass, Romain Lopez, S Prabhakaran, S Semrau, U Shaham, WE Johnson   +39 more
core   +1 more source

Characterization, Expression Profile Analysis, and Functional Prediction of UGP Gene Family in Dendrocalamus brandisii

Plants
UDP-glucose pyrophosphorylase (UGPase) is essential for carbohydrate metabolism, catalyzing UDP-glucose synthesis, a precursor for sucrose and cellulose biosynthesis.
He Li, Chongyang Wu, Xiangyi Li, Junlei Xu, Zhanchao Cheng, Jian Gao   +5 more
doaj   +1 more source

Identification of the WAK/WAKL gene family in melon and expression analysis in response to Phytophthora capsici infection [PDF]

Guoshu xuebao
[Objective] As a crucial class of receptor-like protein kinases, genes in the WAK/WAKL family play a vital role in plant growth and development, disease resistance, and stress responses.
ZHANG Linlong, WANG Fangfang, HE Yumin, XUE Bing, SHEN Chenyang, LI Jie, ZHAO Shengjie, XU Zhihong, WANG Pingyong   +8 more
doaj   +1 more source

Functional Characterization of PoEP1 in Regulating the Flowering Stage of Tree Peony

Plants
The tree peony, a traditional flower in China, has a short and concentrated flowering period, restricting the development of the tree peony industry. To explore the molecular mechanism of tree peony flowering-stage regulation, PoEP1, which regulated the ...
Yang Lei, Jingshan Gao, Yuying Li, Chengwei Song, Qi Guo, Lili Guo, Xiaogai Hou   +6 more
doaj   +1 more source

A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves [PDF]

, 2013
A model is presented describing the gene regulatory network surrounding three similar NAC transcription factors that have roles in Arabidopsis leaf senescence and stress responses. ANAC019, ANAC055 and ANAC072 belong to the same clade of NAC domain genes
Abe, Allemeersch, Balazadeh, Baudry, Benjamini, Borevitz, Brady, Breeze, Bu, Castrillo, Denby, Dobi, Edgar, Fan, Feys, Fujita, Gilmour, Guo, Haake, Hao, He, Higo, Hu, Jensen, Kel, Kerr, Kilian, Libault, Liu, Maere, Mandaokar, Matys, Medina, Mengiste, Mitsuda, Nakashima, Niu, Ooka, Ou, Park, Penfold, Penfold, Pruneda-Paz, Puranik, Riechmann, Sakuma, Schuhegger, Solano, Stegle, Stracke, Tissier, Tran, Wettenhall, Windram, Winter, Yoshida, Zheng, Zou, Çevik   +58 more
core   +1 more source

Identification and Expression Analysis of the BTB/POZ Gene Family in Solanum tuberosum

Horticulturae
The BTB/POZ (broad-complex, tramtrack, and bric-a-brac) family of proteins is widespread in plants and animals and plays important roles in growth, development, metabolism, and environmental responses. There are few reports on BTB family genes in potato.
Haoyue Feng, Yifei Lu, Bi Ren, Shimin Yang, Yongjian Liu, Liming Lu, Liqin Li   +6 more
doaj   +1 more source

Genome-Wide Analysis of Gene Expression during Early Arabidopsis Flower Development [PDF]

, 2005
Detailed information about stage-specific changes in gene expression is crucial for the understanding of the gene regulatory networks underlying development.
Alves-Ferreira, Márcio, Dubois, Annick, Meyerowitz, Elliot M., Riechmann, José Luis, Wellmer, Frank   +4 more
core   +5 more sources

Genome-Wide Identification of the GRAS Transcription Factor Family in Medicago ruthenica and Expression Analysis Under Drought Stress

Agronomy
The GRAS gene family encodes a group of plant-specific transcription factors essential for regulating plant growth, development and stress responses.
Xingli Wang, Xueming Dong, Pengzhen Li, Mingyu Li, Zhaoming Wang, Qiang Zhou, Zhipeng Liu, Longfeng Yan   +7 more
doaj   +1 more source

A conceptual approach to gene expression analysis enhanced by visual analytics [PDF]

, 2013
The analysis of gene expression data is a complex task for biologists wishing to understand the role of genes in the formation of diseases such as cancer.
Andrews, Simon, Aufaire, Marie-Aude, Burger, Albert, McLeod, Kenneth, Melo, Cassio, Orphanides, Constantinos   +5 more
core   +2 more sources