Results 151 to 160 of about 37,179 (261)

CBIcall: a configuration-driven framework for variant calling in large sequencing cohorts. [PDF]

Bioinform Adv
Rueda M, Fernandez-Orth D, Gut IG.
europepmc   +1 more source

Identification of Genetic Loci Conveying Resistance to Fusarium oxysporum f. sp. ciceris Race 0 in Chickpea

Plant Breeding, EarlyView.
ABSTRACT Chickpea (Cicer arietinum L.) is a legume that is widely consumed around the world due to its nutritional content. Fusarium oxysporum f. sp. ciceris is a serious, destructive pathogen that causes fusarium wilt disease and affects chickpea production.
Selda Kurt Ozyaramis, Talap Talapov, Canan Can, Muhammed Bahattin Tanyolac, Ahmed Rami al Saadi, Duygu Ates   +5 more
wiley   +1 more source

AgrOmicSo: A client-server interface for accessible large-scale analysis of next-generation sequencing data. [PDF]

PLoS One
Lee DJ, Lee TH, Kwon T.
europepmc   +1 more source

Genome‐Wide Association Study Elucidates the Genetic Architecture of Manganese Tolerance in Brassica napus

Plant, Cell &Environment, EarlyView.
ABSTRACT Brassica napus (canola) is a significant contributor to the world's oil production and is cultivated across continents, yet acidic soils with aluminium (Al3+) and manganese (Mn2+) toxicities limit its production. The genetic determinants underlying natural variation for acidic soil tolerance in canola are unknown and need to be determined ...
Harsh Raman, Zetao Bai, Brett McVittie, Sourav Mukherjee, Hugh D. Goold, Yuanyuan Zhang, Nay Chi Khin, Yu Qiu, Nawar Shamaya, Shengyi Liu, Regine Delourme, Barry J. Pogson, Sureshkumar Balasubramanian, Rosy Raman   +13 more
wiley   +1 more source

Fifteen Years of the Genome Analysis Toolkit as the De Facto Standard in Short-Read Variant Calling. [PDF]

Int J Mol Sci
Blazyte A, Le L, Lee J, Bayarsaikhan D, Lee B.   +4 more
europepmc   +1 more source

Revealing the Key Genetic Basis of Late Leaf Spot Resistance in Peanut by Combining QTL Mapping, QTL‐seq and RNA‐seq

Plant, Cell &Environment, EarlyView.
ABSTRACT Late leaf spot (LLS) is the most widespread and destructive fungal disease affecting peanut worldwide, yet relatively little is known about its genetic basis. In this study, QTL mapping using a 1327‐bin map (derived from 9533 SNP/InDel markers) and multi‐environment phenotypic data repeatedly detected two major LLS‐resistance QTLs on ...
Wenhui Cui, Pengxia Guo, Bolun Yu, Huifang Jiang, Yong Lei, Boshou Liao, Huaiyong Luo, Xin Wang, Li Huang, Nian Liu, Jianbing Guo, Weigang Chen, Xiaojing Zhou   +12 more
wiley   +1 more source

Benchmarking genomic variant calling tools in inbred mouse strains: recommendations and considerations. [PDF]

Genetics
Garretson A, Blanco-Berdugo L, Roberts AMG, Dumont BL.   +3 more
europepmc   +1 more source

UV signature mutation hyperhotspots as genomic dosimeters

Photochemistry and Photobiology, EarlyView.
Recurrent UV signature mutations are a sensitive and specific indicator of sun exposure. UV signature mutations (C → T mutations at dipyrimidine sites) were quantified using Duplex Sequencing and a stringent mutation calling protocol to identify true low‐abundance mutations.
Vijay Menon, Alejandro García‐Ruiz, Susan Neveu, Brenda Cartmel, Leah M. Ferrucci, Meg Palmatier, Christine Ko, Kenneth Y. Tsai, Mio Nakamura, Sa Rang Kim, Michael Girardi, Karl Kornacker, Douglas E. Brash   +12 more
wiley   +1 more source

A multi‐race blast resistance locus identified and validated in US elite rice via association and biparental mapping

The Plant Genome, Volume 19, Issue 4, December 2026.
Abstract Rice blast, caused by Magnaporthe oryzae (syn. Pyricularia oryzae), remains a major disease in US rice (Oryza sativa L.) production, highlighting the need for additional resistance loci and continued development of blast‐resistant rice varieties. We evaluated 258 US elite long‐grain breeding lines for resistance to four M.
J. M. Manangkil, B. Angira, E. Oliveira‐Garcia, J. K. Richards, R. Fritsche‐Neto, J. Punzalan, C. O. Hernandez, K. Robbins, S. McCouch, A. N. Famoso   +9 more
wiley   +1 more source

Whole-genome resequencing data of 200 domestic yaks from China. [PDF]

Sci Data
Cai B, Xiong L, Pei J, Ge Q, Guo X.
europepmc   +1 more source