Results 201 to 210 of about 566,833 (345)

Gene Annotation and Transcriptome Delineation on a De Novo Genome Assembly for the Reference Leishmania major Friedlin Strain. [PDF]

Genes (Basel), 2021
Camacho E, González-de la Fuente S, Solana JC, Rastrojo A, Carrasco-Ramiro F, Requena JM, Aguado B.   +6 more
europepmc   +1 more source

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline. [PDF]

, 2006
Manimozhiyan Arumugam, Chaochun Wei, Randall H. Brown, Michael R. Brent   +3 more
openalex   +1 more source

Unveiling unique protein and phosphorylation signatures in lung adenocarcinomas with and without ALK, EGFR, and KRAS genetic alterations

Molecular Oncology, EarlyView.
Proteomic and phosphoproteomic analyses were performed on lung adenocarcinoma (LUAD) tumors with EGFR, KRAS, or EML4–ALK alterations and wild‐type cases. Distinct protein expression and phosphorylation patterns were identified, especially in EGFR‐mutated tumors. Key altered pathways included vesicle transport and RNA splicing.
Fanni Bugyi, Mirjam Balbisi, Simon Sugár, Lóránd Váncza, Eszter Regős, Ilona Kovalszky, Ibolya Laczó, Tünde Harkó, Gábor Kecskeméti, Zoltán Szabó, Judit Moldvay, László Drahos, Lilla Turiák   +12 more
wiley   +1 more source

A Novel Full-Length Transcriptome Resource for Sea Cucumber Apostichopus japonicus Using Pacbio SMRT Sequencing

Frontiers in Marine Science, 2022
Yujia Yang, Muyan Chen, Yixin Wang, Lina Sun   +3 more
doaj   +1 more source

Exclusive functional signatures for gene annotation with vast OpenOrd layout. [PDF]

Algorithms Mol Biol
Buzanov G, Makeev V.
europepmc   +1 more source

Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning. [PDF]

Bioinformatics, 2021
Stiehler F, Steinborn M, Scholz S, Dey D, Weber APM, Denton AK.   +5 more
europepmc   +1 more source

Iterative gene prediction and pseudogene removal improves genome annotation [PDF]

, 2006
Marijke J. van Baren, Michael R. Brent
openalex   +1 more source

Targeting of PTP4A3 overexpression sensitises HGSOC cells towards chemotherapeutic drugs

Molecular Oncology, EarlyView.
In HGSOC with normal KRAS expression, high PTP4A3 expression regulates autophagy activation. Conversely, in HGSOC with high KRAS expression, KRAS dictates autophagy control, and PTP4A3 is not required. When high PTP4A3 expression is inhibited, HGSOC cells are preferentially sensitised towards DNA‐damaging agents.
Ana López‐Garza, David James, Emma Creagh, James T. Murray   +3 more
wiley   +1 more source

DeNoFo: a file format and toolkit for standardized, comparable de novo gene annotation. [PDF]

Bioinformatics
Dohmen E, Aubel M, Eicholt LA, Roginski P, Luria V, Karger A, Grandchamp A.   +6 more
europepmc   +1 more source

Protocol for using NoBadWordsCombiner to merge and minimize "bad words" from BLAST hits against multiple eukaryotic gene annotation databases. [PDF]

STAR Protoc, 2021
Zhang X, Hu Y, Smith DR.
europepmc   +1 more source