Results 201 to 210 of about 463,290 (301)

GOWDL: gene ontology-driven wide and deep learning model for cell typing of scRNA-seq data. [PDF]

Brief Bioinform, 2023
Fiannaca A, La Rosa M, La Paglia L, Gaglio S, Urso A.   +4 more
europepmc   +1 more source

Discovery of H2 Receptor Antagonists as Colistin Enhancers by Targeting Acid Stress Response

Advanced Science, EarlyView.
This study identifies YqgB as a key target for restoring colistin susceptibility in mcr‐positive pathogens under acidic conditions by remodeling phospholipid composition and reducing LPS modification. Deep learning‐based screening reveals H2 receptor antagonists as novel colistin adjuvants. Further investigations indicate that ranitidine and famotidine
Jinju Cai, Mengping He, Jianya Luo, Shuang Zhou, Tengyue Zhang, Jianing Li, Zhiqiang Wang, Yuan Liu   +7 more
wiley   +1 more source

ProtGO: universal protein function prediction utilizing multi-modal gene ontology knowledge. [PDF]

Bioinformatics
Wang B, Geng Y, Cheng X, Chen B, Bei Z, Wang W, Tang J, Song L.   +7 more
europepmc   +1 more source

Prediction of anti-microtubular target proteins of tubulins and their interacting proteins using Gene Ontology tools. [PDF]

J Genet Eng Biotechnol, 2023
Ramesh Babu PB.
europepmc   +1 more source

TRMT6‐Mediated m1A Modification of CDK9 mRNA Is a Dual‐Pronged Pathogenic Driver for HBV‐Related Hepatocellular Carcinoma

Advanced Science, EarlyView.
TRMT6‐mediated m1A modification in CDK9 mRNA enhances its mRNA stability and translation efficiency, thereby increasing the protein levels of CDK9. Upregulated CDK9 promotes the progression of HCC by elevating the levels of oncogenic factors including p‐STAT3, MCL1, and BCL‐2. On the other hand, CDK9 phosphorylates TARDBP at Ser254 to activate HBV core
Rui Zhang, Dandan Zong, Rui Liu, Yubo Wang, Qingqing Gu, Yao Yao, Wenfang Zheng, Mengmeng Yuan, Simeng Wang, Rongrong Cui, Daxu Li, Siwen Dang, Peng Hou   +12 more
wiley   +1 more source

ScGOclust: leveraging gene ontology to find functionally analogous cell types between distant species. [PDF]

Bioinformatics
Song Y, Hu Y, Dow J, Perrimon N, Papatheodorou I.   +4 more
europepmc   +1 more source

Conformable Microelectrode Arrays Integrated with a Scoop‐Shaped Slide‐Well for Dynamic Electrophysiological Profiling of Patient‐Derived Cardiac Organoids

Advanced Science, EarlyView.
A flexible, ultrathin multi‐channel microelectrode array (MEA) conformally integrated onto a curved slide‐well enables stable electrical interfacing with 3D cardiac organoids. The geometry‐guided self‐alignment allows simultaneous recording of extracellular field potentials and contractile motion from irregular, beating tissues.
Ye Seul Kim, Jeonghwa Jeong, Gyeonghwa Heo, Young Woo Kwon, Jeongha Lee, Yoon Ji Jeong, Gyu Tae Park, Seongdo Jeong, Ki Won Hwang, Murim Choi, Jinhong Shin, Suck Won Hong, Jae Ho Kim   +12 more
wiley   +1 more source

GeOKG: geometry-aware knowledge graph embedding for Gene Ontology and genes. [PDF]

Bioinformatics
Jeong CU, Kim J, Kim D, Sohn KA.
europepmc   +1 more source

Evaluating the Utilities of Foundation Models in Single‐Cell Data Analysis

Advanced Science, EarlyView.
This study delivers the first systematic, task‐level evaluation of single‐cell foundation models across eight core analytical tasks. By benchmarking 10 leading models with the scEval framework, it reveals where foundation models truly add value, where task‐specific methods still dominate, and provides concrete, reproducible guidelines to steer the next
Tianyu Liu, Kexing Li, Yuge Wang, Hongyu Li, Hongyu Zhao   +4 more
wiley   +1 more source

GOBoost: leveraging long-tail gene ontology terms for accurate protein function prediction. [PDF]

Bioinformatics
Zhang L, Wang Y, Chen X, Hou J, Si D, Ding R, Jiang B, Ledenko H, Cao R.   +8 more
europepmc   +1 more source