Results 61 to 70 of about 7,457,987 (378)

Toll-like receptor signaling in vertebrates: Testing the integration of protein, complex, and pathway data in the Protein Ontology framework [PDF]

, 2015
The Protein Ontology (PRO) provides terms for and supports annotation of species-specific protein complexes in an ontology framework that relates them both to their components and to species-independent families of complexes.
Arighi, Cecilia, D’Eustachio, Peter, Masci, Anna Maria, Natale, Darren, Ruttenberg, Alan, Shamovsky, Veronica, Smith, Barry, Wu, Cathy   +7 more
core   +9 more sources

ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity

BioData Mining, 2019
The main objective of ViSEAGO package is to carry out a data mining of biological functions and establish links between genes involved in the study. We developed ViSEAGO in R to facilitate functional Gene Ontology (GO) analysis of complex experimental ...
A. Brionne, A. Juanchich, C. Hennequet-Antier   +2 more
semanticscholar   +1 more source

Classifying genes to the correct Gene Ontology Slim term in Saccharomyces cerevisiae using neighbouring genes with classification learning

BMC Genomics, 2010
Background There is increasing evidence that gene location and surrounding genes influence the functionality of genes in the eukaryotic genome. Knowing the Gene Ontology Slim terms associated with a gene gives us insight into a gene's functionality by ...
Tsatsoulis Costas, Amthauer Heather A
doaj   +1 more source

A Simple Protocol for Informative Visualization of Enriched Gene Ontology Terms

Bio-protocol, 2019
[Abstract] In genome-scale datasets, Gene Ontology (GO) enrichment is a common analysis to highlight functions over-represented or under-represented in a subset of differentially expressed genes to elucidate the biological significance of the results ...
Titouan Bonnot, M. Gillard, Dawn H. Nagel   +2 more
semanticscholar   +1 more source

InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk

BMC Genomics, 2018
Background Since the establishment of the first biomedical ontology Gene Ontology (GO), the number of biomedical ontology has increased dramatically. Nowadays over 300 ontologies have been built including extensively used Disease Ontology (DO) and Human ...
Liang Cheng, Yue Jiang, Hong Ju, Jie Sun, Jiajie Peng, Meng Zhou, Yang Hu   +6 more
doaj   +1 more source

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology [PDF]

Nucleic Acids Research, 2004
The Gene Ontology Annotation (GOA) database (http://www.ebi.ac.uk/GOA) aims to provide high-quality electronic and manual annotations to the UniProt Knowledgebase (Swiss-Prot, TrEMBL and PIR-PSD) using the standardized vocabulary of the Gene Ontology (GO).
Evelyn, Camon, Michele, Magrane, Daniel, Barrell, Vivian, Lee, Emily, Dimmer, John, Maslen, David, Binns, Nicola, Harte, Rodrigo, Lopez, Rolf, Apweiler   +9 more
openaire   +2 more sources

The development of non-coding RNA ontology [PDF]

, 2016
Identification of non-coding RNAs (ncRNAs) has been significantly improved over the past decade. On the other hand, semantic annotation of ncRNA data is facing critical challenges due to the lack of a comprehensive ontology to serve as common data ...
Blake, Judith, de Silva, Nisansa, Dou, Deijing, Eilbeck, Karen, Huan, Jun, Huang, Jingshan, Huang, Weili, Jiang, Guoqian, Kasukurthi, Mohan Vamsi, Lin, Yu, Natale, Darren, Ruttenberg, Alan, Smith, Barry, Strachan, Harrison, Wu, Bin, Zimmermann, Michael   +15 more
core   +1 more source

Primer on the Gene Ontology [PDF]

, 2016
to appear in forthcoming book "The Gene Ontology Handbook" (Springer Humana)
Gaudet, P, Škunca, N, Hu, JC, Dessimoz, C   +3 more
openaire   +5 more sources

Improvements to cardiovascular Gene Ontology

Atherosclerosis, 2009
Gene Ontology (GO) provides a controlled vocabulary to describe the attributes of genes and gene products in any organism. Although one might initially wonder what relevance a 'controlled vocabulary' might have for cardiovascular science, such a resource is proving highly useful for researchers investigating complex cardiovascular disease phenotypes as
Lovering, Ruth C., Dimmer, Emily C., Talmud, Philippa J.   +2 more
openaire   +2 more sources

Multi-label literature classification based on the Gene Ontology graph

BMC Bioinformatics, 2008
Background The Gene Ontology is a controlled vocabulary for representing knowledge related to genes and proteins in a computable form. The current effort of manually annotating proteins with the Gene Ontology is outpaced by the rate of accumulation of ...
Lu Xinghua, Zhai Chengxiang, Muller Brian, Jin Bo   +3 more
doaj   +1 more source