Evaluation of Different Gene Prediction Tools in Coccidioides immitis [PDF]
Journal of Fungi, 2023 Gene prediction is required to obtain optimal biologically meaningful information from genomic sequences, but automated gene prediction software is imperfect.
Theo N. Kirkland +2 more
doaj +2 more sources
Lung adenocarcinoma-related target gene prediction and drug repositioning [PDF]
Frontiers in Pharmacology, 2022 Lung cancer is the leading cause of cancer deaths globally, and lung adenocarcinoma (LUAD) is the most common type of lung cancer. Gene dysregulation plays an essential role in the development of LUAD.
Rui Xuan Huang +11 more
doaj +2 more sources
Long-read microbial genome assembly, gene prediction and functional annotation: a service of the MIRRI ERIC Italian node [PDF]
Frontiers in BioinformaticsBackgroundUnderstanding the structure and function of microbial genomes is crucial for uncovering their ecological roles, evolutionary trajectories, and potential applications in health, biotechnology, agriculture, food production, and environmental ...
Sandro Gepiro Contaldo +11 more
doaj +2 more sources
Realizing the promise of genome-wide association studies for effector gene prediction. [PDF]
Nat GenetCostanzo MC +5 more
europepmc +3 more sources
Genome Assemblies of Two Ormosia Species: Gene Duplication Related to Their Evolutionary Adaptation
Agronomy, 2023 Ormosia is a genus of the Fabaceae family that shows a distinct evolutionary history due to its typical Asian-American tropical disjunction distribution pattern. However, both its phylogeny and biogeographic mechanisms have not been fully resolved.
Pan-Pan Liu +6 more
doaj +1 more source
Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes
Viruses, 2021 SARS-CoV-2 genomic sequencing efforts have scaled dramatically to address the current global pandemic and aid public health. However, autonomous genome annotation of SARS-CoV-2 genes, proteins, and domains is not readily accomplished by existing methods ...
Kristen L. Beck +9 more
doaj +1 more source
Microbial Community Dysbiosis and Functional Gene Content Changes in Apple Flowers due to Fire Blight [PDF]
The Plant Pathology Journal, 2021 Despite the plant microbiota plays an important role in plant health, little is known about the potential interactions of the flower microbiota with pathogens.
Hyun Gi Kong +4 more
doaj +1 more source
T-Gene: improved target gene prediction [PDF]
Bioinformatics, 2019 Abstract Motivation Identifying the genes regulated by a given transcription factor (TF) (its ‘target genes’) is a key step in developing a comprehensive understanding of gene regulation. Previously, we developed a method (CisMapper) for predicting the target genes of a TF based solely on the ...
Timothy O’Connor +3 more
openaire +4 more sources
An Ovarian Cancer Susceptible Gene Prediction Method Based on Deep Learning Methods
Frontiers in Cell and Developmental Biology, 2021 Ovarian cancer (OC) is one of the most fatal diseases among women all around the world. It is highly lethal because it is usually diagnosed at an advanced stage which may reduce the survival rate greatly.
Lu Ye +4 more
doaj +1 more source
Partial Gap-Filling of the Nile Tilapia (Oreochromis niloticus) Draft Genome [PDF]
Arab Universities Journal of Agricultural Sciences, 2023 Nile tilapia is a freshwater fish of African origin, with productive and economic characteristics affecting global fish markets. The Oreochromis niloticus reference genome has a diploid set of 22 linkage groups (LGs) in addition to ungrouped sequences. A
Hala Zoghly +2 more
doaj +1 more source