Results 11 to 20 of about 9,695,054 (384)
Gene prediction in the immunoglobulin loci. [PDF]
Genome Res, 2022 The V(D)J recombination process rearranges the variable (V), diversity (D), and joining (J) genes in the immunoglobulin (IG) loci to generate antibody repertoires. Annotation of these loci across various species and predicting the V, D, and J genes (IG genes) are critical for studies of the adaptive immune system.
Sirupurapu V, Safonova Y, Pevzner PA.
europepmc +3 more sources
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function [PDF]
Nucleic Acids Research, 2010 GeneMANIA (http://www.genemania.org) is a flexible, user-friendly web interface for generating hypotheses about gene function, analyzing gene lists and prioritizing genes for functional assays.
David Warde-Farley +16 more
semanticscholar +3 more sources
T-Gene: improved target gene prediction. [PDF]
Bioinformatics, 2020 Abstract Motivation Identifying the genes regulated by a given transcription factor (TF) (its ‘target genes’) is a key step in developing a comprehensive understanding of gene regulation. Previously, we developed a method (CisMapper) for predicting the target genes of a TF based solely on the ...
O'Connor T +3 more
europepmc +7 more sources
Microbial Community Dysbiosis and Functional Gene Content Changes in Apple Flowers due to Fire Blight [PDF]
The Plant Pathology Journal, 2021 Despite the plant microbiota plays an important role in plant health, little is known about the potential interactions of the flower microbiota with pathogens.
Hyun Gi Kong +4 more
doaj +1 more source
Genome Assemblies of Two Ormosia Species: Gene Duplication Related to Their Evolutionary Adaptation
Agronomy, 2023 Ormosia is a genus of the Fabaceae family that shows a distinct evolutionary history due to its typical Asian-American tropical disjunction distribution pattern. However, both its phylogeny and biogeographic mechanisms have not been fully resolved.
Pan-Pan Liu +6 more
doaj +1 more source
Partial Gap-Filling of the Nile Tilapia (Oreochromis niloticus) Draft Genome [PDF]
Arab Universities Journal of Agricultural Sciences, 2023 Nile tilapia is a freshwater fish of African origin, with productive and economic characteristics affecting global fish markets. The Oreochromis niloticus reference genome has a diploid set of 22 linkage groups (LGs) in addition to ungrouped sequences. A
Hala Zoghly +2 more
doaj +1 more source
StartLink and StartLink+: Prediction of Gene Starts in Prokaryotic Genomes
Frontiers in Bioinformatics, 2021 State-of-the-art algorithms of ab initio gene prediction for prokaryotic genomes were shown to be sufficiently accurate. A pair of algorithms would agree on predictions of gene 3′ends. Nonetheless, predictions of gene starts would not match for 15–25% of
Karl Gemayel +4 more
doaj +1 more source
Frontiers in Genetics, 2023 Dollar spot is one of the most damaging diseases in turfgrass, reducing its quality and playability. Two species, Clarireedia monteithiana and C. jacksonii (formerly Sclerotinia homoeocarpa) have been reported so far in the United States To study the ...
Bochra Amina Bahri +9 more
doaj +1 more source
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
NAR Genomics and Bioinformatics, 2020 We have made several steps toward creating a fast and accurate algorithm for gene prediction in eukaryotic genomes. First, we introduced an automated method for efficient ab initio gene finding, GeneMark-ES, with parameters trained in iterative ...
Tomáš Brůna +2 more
semanticscholar +1 more source
Predictive modeling of gene expression regulation [PDF]
BMC Bioinformatics, 2021 Abstract Background In-depth analysis of regulation networks of genes aberrantly expressed in cancer is essential for better understanding tumors and identifying key genes that could be therapeutically targeted. Results We developed a quantitative analysis approach to ...
Matteo Matteucci +7 more
openaire +4 more sources