Incubation determines favorable microbial communities in Chinese alligator nests
Frontiers in Microbiology, 2022 Nest materials are a major heat source due to rotting promoted by microbial activity. Additionally, they are a potential microbial source given their direct contact with eggshells.
Qin-Zhang Yu +4 more
doaj +1 more source
MMpred: functional miRNA – mRNA interaction analyses by miRNA expression prediction [PDF]
, 2012 Background: MicroRNA (miRNA) directed gene repression is an important mechanism of posttranscriptional regulation. Comprehensive analyses of how microRNA influence biological processes requires paired miRNA-mRNA expression datasets.
Cauchi, Michael +2 more
core +1 more source
Predictive analysis of microarray data [PDF]
, 2014 Microarray gene expression data are analyzed by means of a Bayesian nonparametric model, with emphasis on prediction of future observables, yielding a method for selection of differentially expressed genes and a ...
F., Paulo C. Marques +1 more
core +1 more source
miRDB: An online database for prediction of functional microRNA targets [PDF]
, 2020 MicroRNAs (miRNAs) are small noncoding RNAs that act as master regulators in many biological processes. miRNAs function mainly by downregulating the expression of their gene targets.
Chen, Yuhao, Wang, Xiaowei
core +1 more source
Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genus Acidithiobacillus: Functional Inferences and Use As Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation [PDF]
, 2016 Indexación: Web of Science.Using phylogenomic and gene compositional analyses, five highly conserved gene families have been detected in the core genome of the phylogenetically coherent genus Acidithiobacillus of the class Acidithiobacillia.
Gonzalez, C +3 more
core +1 more source
BMC Genomics, 2018 BackgroundMost published genome sequences are drafts, and most are dominated by computational gene prediction. Draft genomes typically incorporate considerable sequence data that are not assigned to chromosomes, and predicted genes without quality ...
Sarah M. Pilkington +98 more
semanticscholar +1 more source
Effective gene expression prediction from sequence by integrating long-range interactions
Nature Methods, 2021 How noncoding DNA determines gene expression in different cell types is a major unsolved problem, and critical downstream applications in human genetics depend on improved solutions.
Žiga Avsec +9 more
semanticscholar +1 more source
Netter: re-ranking gene network inference predictions using structural network properties [PDF]
, 2016 Background: Many algorithms have been developed to infer the topology of gene regulatory networks from gene expression data. These methods typically produce a ranking of links between genes with associated confidence scores, after which a certain ...
Demeester, Piet +3 more
core +2 more sources
Gene prediction: compare and CONTRAST [PDF]
Genome Biology, 2007 CONTRAST, a new gene-prediction algorithm that uses sophisticated machine-learning techniques, has pushed de novo prediction accuracy to new heights, and has significantly closed the gap between de novo and evidence-based methods for human genome annotation.
openaire +3 more sources
SIFTER search: a web server for accurate phylogeny-based protein function prediction. [PDF]
, 2015 We are awash in proteins discovered through high-throughput sequencing projects. As only a minuscule fraction of these have been experimentally characterized, computational methods are widely used for automated annotation.
Brenner, Steven E +2 more
core +5 more sources