Results 21 to 30 of about 625,256 (313)

A survey of genetic improvement search spaces [PDF]

, 2019
Genetic Improvement (GI) uses automated search to improve existing software. Most GI work has focused on empirical studies that successfully apply GI to improve software's running time, fix bugs, add new features, etc. There has been little research into
Alexander, B, Petke, Justyna, Alexander, Brad, Petke, J, White, DR, Wagner, M., Barr, ET, White, David R, Wagner, M, Barr, Earl T, Alexander, B., White, D.R., Petke, J., Barr, E.T., Brownlee, AEI, Brownlee, Alexander E I, Wagner, Markus, Brownlee, A.E.I.   +17 more
core   +1 more source

Genetically improved BarraCUDA

BioData Mining, 2017
BarraCUDA is a C program which uses the BWA algorithm in parallel with nVidia CUDA to align short next generation DNA sequences against a reference genome. The genetically improved (GI) code is up to three times faster on short paired end reads from The 1000 Genomes Project and 60percent more accurate on a short BioPlanet.com GCAT alignment benchmark ...
William B. Langdon, Brian Yee Hong Lam
openaire   +5 more sources

Three types of genes underlying the Gametophyte factor1 locus cause unilateral cross incompatibility in maize

Nature Communications, 2022
Unilateral cross incompatibility (UCI) is a type of prezygotic reproductive isolation, which is associated with multiple loci in maize. Here, the authors use genetic analysis to separate the Ga1 locus into two functional components and identify seven ...
Yuebin Wang, Wenqiang Li, Luxi Wang, Jiali Yan, Gang Lu, Ning Yang, Jieting Xu, Yuqing Wang, Songtao Gui, Gengshen Chen, Shuyan Li, Chengxiu Wu, Tingting Guo, Yingjie Xiao, Marilyn L. Warburton, Alisdair R. Fernie, Thomas Dresselhaus, Jianbing Yan   +17 more
doaj   +1 more source

Genetic improvement of eating and cooking quality of rice cultivars in southern China. [PDF]

Plant Biotechnol J
Cai Y, Chen Z, Liu J, Yu L, Wang Z, Zhu S, Shi W, Pan C, Wu Y, Li Y, Ji H, Huang N, Zhang X, Gao P, Xiao N, Zuo S, Li A.   +16 more
europepmc   +2 more sources

Gin: Genetic Improvement Research Made Easy [PDF]

, 2019
Genetic improvement (GI) is a young field of research on the cusp of transforming software development. GI uses search to improve existing software. Researchers have already shown that GI can improve human-written code, ranging from program repair to ...
David R. White, Alexander, B, Petke, Justyna, Justyna Petke, Brad Alexander, Markus Wagner, White, David R., Alexander, Brad, Petke, J, White, DR, Wagner, M., Barr, ET, Barr, Earl T, Wagner, M, Earl T. Barr, Alexander, B., White, D.R., Petke, J., Barr, E.T., Brownlee, AEI, Brownlee, Alexander E I, Alexander E. I. Brownlee, Wagner, Markus, Brownlee, A.E.I.   +23 more
core   +1 more source

Cotton pan-genome retrieves the lost sequences and genes during domestication and selection

Genome Biology, 2021
Background Millennia of directional human selection has reshaped the genomic architecture of cultivated cotton relative to wild counterparts, but we have limited understanding of the selective retention and fractionation of genomic components. Results We
Jianying Li, Daojun Yuan, Pengcheng Wang, Qiongqiong Wang, Mengling Sun, Zhenping Liu, Huan Si, Zhongping Xu, Yizan Ma, Boyang Zhang, Liuling Pei, Lili Tu, Longfu Zhu, Ling-Ling Chen, Keith Lindsey, Xianlong Zhang, Shuangxia Jin, Maojun Wang   +17 more
doaj   +1 more source

Profitability of a dairy sheep genetic improvement program using artificial insemination [PDF]

, 2010
This simulation study investigated the farm-level economic benefits of a genetic improvement scheme using artificial insemination (AI) with fresh ram semen in dairy sheep of the Chios breed in Greece. Data were collected from 67 farms associated with the
Arsenos, G., Gelasakis, A. I., Oikonomou, G., Valergakis, G. E., Banos, G., Fortomaris, P.   +5 more
core   +1 more source

Development of Whole-Genome Agarose-Resolvable LInDel Markers in Rice

Rice, 2020
The level of difficulty involved in separating marker genotypes greatly determines the utilization of such marker-aided selection (MAS) by breeders.
Wei Hu, Tianhao Zhou, Pengfei Wang, Bo Wang, Jiaming Song, Zhongmin Han, Lingling Chen, Kede Liu, Yongzhong Xing   +8 more
doaj   +1 more source

Integrated metabolomic and transcriptomic study unveils the gene regulatory mechanisms of sugarcane growth promotion during interaction with an endophytic nitrogen-fixing bacteria

BMC Plant Biology, 2023
Background Sugarcane growth and yield are complex biological processes influenced by endophytic nitrogen-fixing bacteria, for which the molecular mechanisms involved are largely unknown. In this study, integrated metabolomic and RNA-seq were conducted to
Qian Nong, Mukesh Kumar Malviya, Manoj Kumar Solanki, Li Lin, Jinlan Xie, Zhanghong Mo, Zeping Wang, Xiupeng Song, Xin Huang, Changning Li, Yangrui Li   +10 more
doaj   +1 more source

Contributions of Zea mays subspecies mexicana haplotypes to modern maize

Nature Communications, 2017
Maize was domesticated from wild lowland progenitors that co-existed with upland subspecies in Southwestern Mexico. Here Yang et al. use a meta-assembly approach to assemble an upland mexicana genome and find evidence of introgression suggesting it ...
Ning Yang, Xi-Wen Xu, Rui-Ru Wang, Wen-Lei Peng, Lichun Cai, Jia-Ming Song, Wenqiang Li, Xin Luo, Luyao Niu, Yuebin Wang, Min Jin, Lu Chen, Jingyun Luo, Min Deng, Long Wang, Qingchun Pan, Feng Liu, David Jackson, Xiaohong Yang, Ling-Ling Chen, Jianbing Yan   +20 more
doaj   +1 more source