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Bacterial Genomics and Epidemiology
Microorganisms, 2023 Innovative technologies for Whole-Genome Sequencing (WGS) help to improve our understanding of the epidemiology and pathogenesis of bacterial infectious diseases and are becoming affordable for most microbiological laboratories [...]
Javier Garaizar, Lorena Laorden
openaire +4 more sources
The layout of a bacterial genome [PDF]
FEBS Letters, 2012 Recently the mismatch between our newly acquired capacity to synthetize DNA at genome scale, and our low capacity to design ab initio a functional genome has become conspicuous. This essay gathers a variety of constraints that globally shape natural genomes, with a focus on eubacteria.
Képès, François +5 more
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BMC Genomics, 2022 Background BEC-producing Clostridium perfringens is a causative agent of foodborne gastroenteritis. It was first reported in 2014, and since then, several isolates have been identified in Japan and the United Kingdom.
Kengo Ueda +14 more
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npbhavya/bacterial-genome-assembly: v1.0
, 2022 All the scripts to assemble bacterial ...
Bhavya Papudeshi
core +1 more source
Bacterial DNA involvement in carcinogenesis
Frontiers in Cellular and Infection Microbiology, 2022 The incidence of cancer is high worldwide, and biological factors such as viruses and bacteria play an important role in the occurrence of cancer. Helicobacter pylori, human papillomavirus, hepatitis B viruses and other organisms have been identified as ...
Wang Yangyanqiu +5 more
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Warmer and drier ecosystems select for smaller bacterial genomes in global soils
iMeta, 2023 Bacterial genome size reflects bacterial evolutionary processes and metabolic lifestyles, with implications for microbial community assembly and ecosystem functions.
Hongwei Liu +5 more
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Microorganisms, 2020 Anthrax is a serious infectious disease caused by the gram-positive and spore-forming bacterium Bacillus anthracis. In Italy, anthrax is an endemic disease with sporadic cases each year and few outbreaks, especially in Southern Italy.
Alexandra Chiaverini +9 more
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Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples. [PDF]
PLoS Computational Biology, 2013 There are 10× more bacterial cells in our bodies from the microbiome than human cells. Viral DNA is known to integrate in the human genome, but the integration of bacterial DNA has not been described. Using publicly available sequence data from the human
David R Riley +6 more
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Proksee: in-depth characterization and visualization of bacterial genomes
Nucleic Acids Res., 2023 Proksee (https://proksee.ca) provides users with a powerful, easy-to-use, and feature-rich system for assembling, annotating, analysing, and visualizing bacterial genomes. Proksee accepts Illumina sequence reads as compressed FASTQ files or pre-assembled
J. Grant +8 more
semanticscholar +1 more source
Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686
Frontiers in Microbiology, 2015 Paracoccus aminophilus JCM 7686 (Alphaproteobacteria) is a facultative, heterotrophic methylotroph capable of utilizing a wide range of C1 compounds as sole carbon and energy sources.
Lukasz eDziewit +6 more
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