Results 11 to 20 of about 228,426 (276)

FGMP: assessing fungal genome completeness [PDF]

BMC Bioinformatics, 2019
Background Inexpensive high-throughput DNA sequencing has democratized access to genetic information for most organisms so that research utilizing a genome or transcriptome of an organism is not limited to model systems.
Ousmane H. Cissé, Jason E. Stajich
doaj   +5 more sources

GalR, GalX and AraR co‐regulate d‐galactose and l‐arabinose utilization in Aspergillus nidulans

Microbial Biotechnology, 2022
Summary Filamentous fungi produce a wide variety of enzymes in order to efficiently degrade plant cell wall polysaccharides. The production of these enzymes is controlled by transcriptional regulators, which also control the catabolic pathways that ...
Jiali Meng, Zoltán Németh, Mao Peng, Erzsébet Fekete, Sandra Garrigues, Anna Lipzen, Vivian Ng, Emily Savage, Yu Zhang, Igor V. Grigoriev, Miia R. Mäkelä, Levente Karaffa, Ronald P. deVries   +12 more
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Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis

G3: Genes, Genomes, Genetics, 2022
Members of the fungal genus PhyllostictaCitrusCitrus sinensisCitrus limonCitrus maximaPhyllostictaPhyllostictaPhyllosticta citrichinaensisPhyllostictaCitrusPhyllosticta citrichinaensisPhyllosticta ...
Valerie A Buijs, Johannes Z Groenewald, Sajeet Haridas, Kurt M LaButti, Anna Lipzen, Francis M Martin, Kerrie Barry, Igor V Grigoriev, Pedro W Crous, Michael F Seidl   +9 more
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Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger

Frontiers in Bioengineering and Biotechnology, 2019
Cinnamic acid is an aromatic compound commonly found in plants and functions as a central intermediate in lignin synthesis. Filamentous fungi are able to degrade cinnamic acid through multiple metabolic pathways.
Ronnie J. M. Lubbers, Adiphol Dilokpimol, Jorge Navarro, Mao Peng, Mei Wang, Anna Lipzen, Vivian Ng, Igor V. Grigoriev, Jaap Visser, Kristiina S. Hildén, Ronald P. de Vries   +10 more
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A comparative genomics study of 23 Aspergillus species from section Flavi

Nature Communications, 2020
Aspergillus fungi classified within the section Flavi include harmful and beneficial species. Here, Kjærbølling et al. analyse the genomes of 23 Flavi species, showing high genetic diversity and potential for synthesis of over 13,700 CAZymes and 1600 ...
Inge Kjærbølling, Tammi Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K. Lyhne, Martin E. Kogle, Ad Wiebenga, Roland S. Kun, Ronnie J. M. Lubbers, Miia R. Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A. Simmons, Jon K. Magnuson, Bernard Henrissat, Uffe H. Mortensen, Thomas O. Larsen, Ronald P. de Vries, Igor V. Grigoriev, Masayuki Machida, Scott E. Baker, Mikael R. Andersen   +36 more
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Fungal endophyte bioinoculants as a green alternative towards sustainable agriculture

Heliyon, 2023
Over the past half century, limited use of synthetic fertilizers, pesticides, and conservation of the environment and natural resources have become the interdependent goals of sustainable agriculture.
Itika Sharma, Ashish Raina, Malvi Choudhary, Apra, Sanjana Kaul, Manoj K. Dhar   +5 more
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The genome sequence and effector complement of the flax rust pathogen Melampsora lini [PDF]

, 2016
Rust fungi cause serious yield reductions on crops, including wheat, barley, soybean, coffee, and represent real threats to global food security. Of these fungi, the flax rust pathogen Melampsora lini has been developed most extensively over the past 80 ...
Anderson, Claire, Dodds, Peter N, Ellis, Jeffrey G, Jones, David A, Kamoun, Sophien, Lawrence, Gregory J, Nemri, Adnane, Saunders, Diane G. O, Upadhyaya, Narayana M, Win, Joe   +9 more
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Practical guidance for the implementation of the CRISPR genome editing tool in filamentous fungi [PDF]

, 2019
Background: Within the last years, numerous reports described successful application of the CRISPR nucleases Cas9 and Cpf1 for genome editing in filamentous fungi.
Haefner, Stefan, Kwon, Jin, Meyer, Vera, Schütze, Tabea, Spohner, Sebastian   +4 more
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Distinct Roles of Two DNA Methyltransferases from Cryphonectria parasitica in Fungal Virulence, Responses to Hypovirus Infection, and Viral Clearance

mBio, 2021
Although relatively few in number, studies of DNA methylation have shown that fungal DNA methylation is implicated in development, genome integrity, and genome defense.
Yo-Han Ko, Kum-Kang So, Jeesun Chun, Dae-Hyuk Kim   +3 more
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Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis [PDF]

, 2011
The plant-pathogenic fungus Mycosphaerella graminicola (asexual stage: Septoria tritici) causes septoria tritici blotch, a disease that greatly reduces the yield and quality of wheat.
Aerts, A., Antoniw, J., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Burgt, A., van der, Canto-Canché, B., Churchill, A.C.L., Conde-Ferràez, L., Cools, H.J., Coutinho, P.M., Crane, C.F., Csukai, M., Dehal, P., Dhillon, B., Donzelli, B., Foster, A.J., Geest, H.C., van de, Goodwin, S.B., Grigoriev, I.V., Grimwood, J., Ham, R.C.H.J., van, Hammond-Kosack, K.E., Hane, J.K., Henrissat, B., Kema, G.H.J., Kilian, A., Kobayashi, A.K., Koopmann, E., Kourmpetis, Y., Kuzniar, A., Lee, T.A.J., van der, Lindquist, E., Lombard, V., M'Barek, S., Ben, Maliepaard, C.A., Martins, N., Mehrabi, A., Nap, J.P.H., Oliver, R.P., Ponomarenko, A., Rudd, J.J., Salamov, A., Schmutz, J., Schouten, H.J., Shapiro, H., Stergiopoulos, I., Torriani, S.F.F., Tu, H., Vries, R.P., de, Waalwijk, C., Ware, S.B., Wiebenga, A., Wit, P.J.G.M., de, Wittenberg, A.H.J., Zwiers, L.H.   +56 more
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