Results 11 to 20 of about 230,429 (298)

Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi. [PDF]

, 2020
Anaerobic fungi (Neocallimastigomycota) are emerging non-model hosts for biotechnology due to their wealth of biomass-degrading enzymes, yet tools to engineer these fungi have not yet been established.
Albà, Arazoe, Atasoglu, Bach, Beckham, Bezanson, Birdsell, Boch, Bonugli-Santos, Brownlee, Calkins, Camacho, Camiolo, Carlson, Chan, Chen, Cheng, Cheng, Chokhawala, Coker, Deshpande, Diener, Dollhofer, Duarte, Durand, Duret, Fondon, Galtier, Gasiunas, Gentzsch, Gerngross, Glass, Glémin, Greene, Grigoriev, Haitjema, Haitjema, Hamilton, Hanafy, Hartfield, Henske, Hershberg, Hildebrand, Hull, Jiang, Karlin, Kiktev, Kleinstiver, Kleinstiver, Knauer, Knight, Kuyper, Leberer, Li, Liggenstoffer, Liu, Magee, Mertens, Meunier, Morrison, Murphy, Nicholson, Nieuwenhuis, Nørholm, Orpin, Oyola, O’Malley, Podolsky, Raymond, Reichenberger, Ropars, Sadhu, Sammond, Sekowska, Seppälä, Seppälä, Solieri, Solomon, Sonan, Staben, Steensels, Steensels, Sukumaran, Theodorou, UniProt: a worldwide hub of protein knowledge, Videvall, Wang, Wang, Wright, Wu, Ximenes, Youssef, Zetsche   +92 more
core   +1 more source

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network

BMC Genomics, 2019
Background Enzymatic plant biomass degradation by fungi is a highly complex process and one of the leading challenges in developing a biobased economy. Some industrial fungi (e.g.
Claire Khosravi, Joanna E. Kowalczyk, Tania Chroumpi, Evy Battaglia, Maria-Victoria Aguilar Pontes, Mao Peng, Ad Wiebenga, Vivian Ng, Anna Lipzen, Guifen He, Diane Bauer, Igor V. Grigoriev, Ronald P. de Vries   +12 more
doaj   +1 more source

Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass

Biotechnology for Biofuels, 2019
Background Trichoderma reesei is one of the major producers of enzymes for the conversion of plant biomass to sustainable fuels and chemicals. Crude plant biomass can induce the production of CAZymes in T.
Tiziano Benocci, Maria Victoria Aguilar-Pontes, Roland Sándor Kun, Ronnie J. M. Lubbers, Kathleen Lail, Mei Wang, Anna Lipzen, Vivian Ng, Igor V. Grigoriev, Bernhard Seiboth, Paul Daly, Ronald P. de Vries   +11 more
doaj   +1 more source

A comparative genomics study of 23 Aspergillus species from section Flavi

Nature Communications, 2020
Aspergillus fungi classified within the section Flavi include harmful and beneficial species. Here, Kjærbølling et al. analyse the genomes of 23 Flavi species, showing high genetic diversity and potential for synthesis of over 13,700 CAZymes and 1600 ...
Inge Kjærbølling, Tammi Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K. Lyhne, Martin E. Kogle, Ad Wiebenga, Roland S. Kun, Ronnie J. M. Lubbers, Miia R. Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A. Simmons, Jon K. Magnuson, Bernard Henrissat, Uffe H. Mortensen, Thomas O. Larsen, Ronald P. de Vries, Igor V. Grigoriev, Masayuki Machida, Scott E. Baker, Mikael R. Andersen   +36 more
doaj   +1 more source

GalR, GalX and AraR co‐regulate d‐galactose and l‐arabinose utilization in Aspergillus nidulans

Microbial Biotechnology, 2022
Summary Filamentous fungi produce a wide variety of enzymes in order to efficiently degrade plant cell wall polysaccharides. The production of these enzymes is controlled by transcriptional regulators, which also control the catabolic pathways that ...
Jiali Meng, Zoltán Németh, Mao Peng, Erzsébet Fekete, Sandra Garrigues, Anna Lipzen, Vivian Ng, Emily Savage, Yu Zhang, Igor V. Grigoriev, Miia R. Mäkelä, Levente Karaffa, Ronald P. deVries   +12 more
doaj   +1 more source

Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger

Frontiers in Bioengineering and Biotechnology, 2019
Cinnamic acid is an aromatic compound commonly found in plants and functions as a central intermediate in lignin synthesis. Filamentous fungi are able to degrade cinnamic acid through multiple metabolic pathways.
Ronnie J. M. Lubbers, Adiphol Dilokpimol, Jorge Navarro, Mao Peng, Mei Wang, Anna Lipzen, Vivian Ng, Igor V. Grigoriev, Jaap Visser, Kristiina S. Hildén, Ronald P. de Vries   +10 more
doaj   +1 more source

Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis

G3: Genes, Genomes, Genetics, 2022
Members of the fungal genus PhyllostictaCitrusCitrus sinensisCitrus limonCitrus maximaPhyllostictaPhyllostictaPhyllosticta citrichinaensisPhyllostictaCitrusPhyllosticta citrichinaensisPhyllosticta ...
Valerie A Buijs, Johannes Z Groenewald, Sajeet Haridas, Kurt M LaButti, Anna Lipzen, Francis M Martin, Kerrie Barry, Igor V Grigoriev, Pedro W Crous, Michael F Seidl   +9 more
doaj   +1 more source

Fungal endophyte bioinoculants as a green alternative towards sustainable agriculture

Heliyon, 2023
Over the past half century, limited use of synthetic fertilizers, pesticides, and conservation of the environment and natural resources have become the interdependent goals of sustainable agriculture.
Itika Sharma, Ashish Raina, Malvi Choudhary, Apra, Sanjana Kaul, Manoj K. Dhar   +5 more
doaj   +1 more source

Fungal genomes tell a story of ecological adaptations [PDF]

, 2014
One genome enables a fungus to have various lifestyles and strategies depending on environmental conditions and in the presence of specific counterparts.
Muszewska, Anna
core   +3 more sources

Distinct Roles of Two DNA Methyltransferases from Cryphonectria parasitica in Fungal Virulence, Responses to Hypovirus Infection, and Viral Clearance

mBio, 2021
Although relatively few in number, studies of DNA methylation have shown that fungal DNA methylation is implicated in development, genome integrity, and genome defense.
Yo-Han Ko, Kum-Kang So, Jeesun Chun, Dae-Hyuk Kim   +3 more
doaj   +1 more source