Results 41 to 50 of about 1,043,209 (275)

Complete Plastid Genome Sequence of the Brown Alga Undaria pinnatifida.

PLoS ONE, 2015
In this study, we fully sequenced the circular plastid genome of a brown alga, Undaria pinnatifida. The genome is 130,383 base pairs (bp) in size; it contains a large single-copy (LSC, 76,598 bp) and a small single-copy region (SSC, 42,977 bp), separated
Lei Zhang, Xumin Wang, Tao Liu, Guoliang Wang, Shan Chi, Cui Liu, Haiyang Wang   +6 more
doaj   +1 more source

Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii

BMC Plant Biology, 2007
Background The holoparasitic plant genus Cuscuta comprises species with photosynthetic capacity and functional chloroplasts as well as achlorophyllous and intermediate forms with restricted photosynthetic activity and degenerated chloroplasts.
Maier Uwe G, Krupinska Karin, Berg Sabine, Funk Helena T, Krause Kirsten   +4 more
doaj   +1 more source

Analysis of the complete plastidial genome of the newly highland papaya Vasconcellea carvalhoae (Caricaceae) from Peru

Mitochondrial DNA. Part B. Resources, 2022
Especially in South American Andean communities, Vasconcellea carvalhoae D. Tineo & D.E. Bustamante 2020 is a significant highland papaya with agronomic promise. High-throughput sequencing of the holotype specimen of V.
Daniel Tineo, Danilo E. Bustamante, Martha S. Calderon   +2 more
doaj   +1 more source

The use of chloroplast genome sequences to solve phylogenetic incongruences in Polystachya Hook (Orchidaceae Juss) [PDF]

, 2018
Background: Current evidence suggests that for more robust estimates of species tree and divergence times, several unlinked genes are required. However, most phylogenetic trees for non-model organisms are based on single sequences or just a few regions ...
Acosta, Barros, Bräutigam, Capella-Gutiérrez, Carstens, Chang, Christenhusz, Cribb, Cronn, Dressler, Dressler, Eaton, Edwards, Freudenstein, Gustafsson, Górniak, Joly, Kamneva, Katoh, Kelchner, Kelchner, Kim, Kraenzlin, Lemmon, Lemmon, Li, Li, Luo, Mamanova, Marshall, McCormack, Michel, Mort, Mytnik-Ejsmont, Parks, Peraza-Flores, Pfeil, Rambaut, Rambaut, Ramírez, Ramírez, Ronquist, Rupp, Russell, Russell, Russell, Shaw, Shaw, Shaw, Small, Smith, Sousa, Steel, Stephens, Summerhayes, Summerhayes, Särkinen, Toor, Tsitrone, Van den Berg, Weitemier   +60 more
core   +2 more sources

PACVr: plastome assembly coverage visualization in R

BMC Bioinformatics, 2020
Background Plastid genomes typically display a circular, quadripartite structure with two inverted repeat regions, which challenges automatic assembly procedures.
Michael Gruenstaeudl, Nils Jenke
doaj   +1 more source

The complete plastid genome sequence of Viola selkirkii Pursh ex Goldie (Violaceae)

Mitochondrial DNA. Part B. Resources, 2022
Viola selkirkii, belonging to the genus Viola, has heart-shaped leaves and pale purple flowers, and it is widely distributed in the Northern Hemisphere, including Europe, North America, and Asia. In this study, the plastid genome of V.
Ah-reum Go, Kyeong-Sik Cheon, Ki-Oug Yoo
doaj   +1 more source

Complete plastid genome of Cumathamnion serrulatum (Ceramiales, Rhodophyta)

Mitochondrial DNA. Part B. Resources, 2021
We report the complete plastid genome of Cumathamnion serrulatum, also known as Delesseria serrulata. The plastid genome was 174,192 bp in size. Annotation showed there were 193 protein coding genes, three ribosomal RNAs, and 29 transfer RNAs. One intron
Hocheol Kim, Do-Yun Lee, Chang Wan Seo, Chung Hyun Cho, Hwan Su Yoon   +4 more
doaj   +1 more source

Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae) [PDF]

, 2016
Background: Panicoideae are the second largest subfamily in Poaceae (grass family), with 212 genera and approximately 3316 species. Previous studies have begun to reveal relationships within the subfamily, but largely lack resolution and/or robust ...
Burke, Sean V., Clark, Lynn G., Craine, Joseph M., Duvall, Melvin R., Edger, Patrick P., Kelchner, Scot A., Mayfield Jones, Dustin, Pires, J. Chris, Wysocki, William P., Zuloaga, Fernando Omar   +9 more
core   +2 more sources

Structural variation of the complete chloroplast genome and plastid phylogenomics of the genus Asteropyrum (Ranunculaceae)

Scientific Reports, 2019
Two complete chloroplast genome sequences of Asteropyrum, as well as those of 25 other species from Ranunculaceae, were assembled using both Illumina and Sanger sequencing methods to address the structural variation of the cp genome and the controversial
Jian He, Min Yao, Rudan Lyu, Lele Lin, Hui-Jie Liu, Linying Pei, Shuangxi Yan, Lei Xie, Jin Cheng   +8 more
semanticscholar   +1 more source

airpg: automatically accessing the inverted repeats of archived plastid genomes

BMC Bioinformatics, 2021
Background In most flowering plants, the plastid genome exhibits a quadripartite genome structure, comprising a large and a small single copy as well as two inverted repeat regions. Thousands of plastid genomes have been sequenced and submitted to public
Tilman Mehl, Michael Gruenstaeudl
doaj   +1 more source