Results 11 to 20 of about 893,715 (267)

Easyfig: a genome comparison visualizer [PDF]

Bioinformatics, 2011
Abstract Summary: Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface. BLAST comparisons between multiple genomic regions, ranging from single genes to whole prokaryote chromosomes, can be generated, visualized and interactively coloured, enabling a ...
Mitchell J. Sullivan, Nicola K. Petty, Scott A. Beatson   +2 more
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Comparison of whole genome assemblies of the human genome [PDF]

Nucleic Acids Research, 2002
A fundamental problem in the human genome project is uncovering the correct assembly of the human genome. Many studies, including transcriptional analysis, SNP detection and characterization, gene finding and EST clustering, use genome assemblies as templates so it is important to determine the consistency among the various whole genome assemblies.
Eric C, Rouchka, Warren, Gish, David J, States   +2 more
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Genomic and proteomic comparisons between bacterial and archaeal genomes and related comparisons with the yeast and fly genomes [PDF]

Proceedings of the National Academy of Sciences, 2005
Bacterial, archaeal, yeast, and fly genomes are compared with respect to predicted highly expressed (PHX) genes and several genomic properties. There is a striking difference in the status of PHX ribosomal protein (RP) genes where the archaeal genome generally encodes more RP genes and fewer PHX RPs compared with bacterial genomes.
Samuel, Karlin, Luciano, Brocchieri, Allan, Campbell, Martha, Cyert, Jan, Mrázek   +4 more
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A Comparison of Rice Chloroplast Genomes   [PDF]

Plant Physiology, 2004
Abstract Using high quality sequence reads extracted from our whole genome shotgun repository, we assembled two chloroplast genome sequences from two rice (Oryza sativa) varieties, one from 93-11 (a typical indica variety) and the other from PA64S (an indica-like variety with maternal origin of japonica), which are both parental ...
Tang, Jiabin, Xia, Hong'ai, Cao, Mengliang, Zhang, Xiuqing, Zeng, Wanyong, Hu, Songnian, Tong, Wei, Wang, Jun, Wang, Jian, Yu, Jun, Yang, Huanming, Zhu, Lihuang   +11 more
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Genome comparison of two Coccolithoviruses [PDF]

Virology Journal, 2006
Abstract Background The Coccolithoviridae is a recently discovered family of viruses that infect the marine coccolithophorid Emiliania huxleyi. Following on from the sequencing of the type strain EhV-86, we have sequenced a second strain, EhV-163. Results We have sequenced
Crawfurd Katharine J, Donkin Andrew, Schroeder Declan C, Allen Michael J, Wilson William H   +4 more
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Ontology for genome comparison and genomic rearrangements

Comparative and Functional Genomics, 2004
AbstractWe present an ontology for describing genomes, genome comparisons, their evolution and biological function. This ontology will support the development of novel genome comparison algorithms and aid the community in discussing genomic evolution. It provides a framework for communication about comparative genomics, and a basis upon which further ...
Flanagan, K, Stevens, R, Pocock, M, Lee, P, Wipat, A   +4 more
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inGeno – an integrated genome and ortholog viewer for improved genome to genome comparisons [PDF]

BMC Bioinformatics, 2006
Systematic genome comparisons are an important tool to reveal gene functions, pathogenic features, metabolic pathways and genome evolution in the era of post-genomics. Furthermore, such comparisons provide important clues for vaccines and drug development.
Chunguang Liang, Thomas Dandekar
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Cactus Graphs for Genome Comparisons

Journal of Computational Biology, 2010
Abstract We introduce a data structure, analysis, and visualization scheme called a cactus graph for comparing sets of related genomes. In common with multi-break point graphs and A-Bruijn graphs, cactus graphs can represent duplications and general genomic rearrangements, but additionally, they naturally ...
Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma 0004, Bernard B. Suh, David Haussler   +6 more
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Initial sequence of the chimpanzee genome and comparison with the human genome [PDF]

Nature, 2005
Here we present a draft genome sequence of the common chimpanzee (Pan troglodytes). Through comparison with the human genome, we have generated a largely complete catalogue of the genetic differences that have accumulated since the human and chimpanzee species diverged from our common ancestor, constituting approximately thirty-five million single ...
Mikkelsen TS, Hillier LW, Eichler EE, Zody MC, Jaffe DB, Yang SP, Enard W, Hellmann I, Lindblad Toh K, Altheide TK, ARCHIDIACONO, Nicoletta, Bork P, Butler J, Chang JL, Cheng Z, Chinwalla AT, deJong P, Delehaunty KD, Fronick CC, Fulton LL, Gilad Y, Glusman G, Gnerre S, Graves TA, Hayakawa T, Hayden KE, Huang XQ, Ji HK, Kent WJ, King MC, Kulbokas EJ, Lee MK, Liu G, Lopez Otin C, Makova KD, Man O, Mardis ER, Mauceli E, Miner TL, Nash WE, Nelson JO, Paabo S, Patterson NJ, Pohl CS, Pollard KS, Prufer K, Puente XS, Reich D, ROCCHI, Mariano, Rosenbloom K, Ruvolo M, Richter DJ, Schaffner SF, Smit AFA, Smith SM, Suyama M, Taylor J, Torrents D, Tuzun E, Varki A, Velasco G, VENTURA, MARIO, Wallis JW, Wendl MC, Wilson RK, Lander ES, Waterston RH, Consortium CSA   +67 more
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Tracing Lifestyle Adaptation in Prokaryotic Genomes

Frontiers in Microbiology, 2012
Lifestyle adaptation of microbes due to changes in their ecological niches or acquisition of new environments is a major driving force for genetic changes in their respective genomes.
Eric eAltermann
doaj   +1 more source