KGP: An R Package with Metadata from the 1000 Genomes Project [PDF]
arXiv, 2022 The 1000 Genomes Project provides sequencing data on 3,202 samples from 26 populations spanning five continental regions with no access or use restrictions. The kgp R package provides consistent and comprehensive metadata about samples and populations in the 1000 Genomes Project and other population sequencing data in the International Genome Sample ...
arxiv
Large-Scale Release of Campylobacter Draft Genomes: Resources for Food Safety and Public Health from the 100K Pathogen Genome Project. [PDF]
, 2017 Campylobacter is a food-associated bacterium and a leading cause of foodborne illness worldwide, being associated with poultry in the food supply. This is the initial public release of 202 Campylobacter genome sequences as part of the 100K Pathogen ...
Arabyan, Narine +12 more
core +2 more sources
Scalable Genomics with R and Bioconductor [PDF]
Statistical Science 2014, Vol. 29, No. 2, 214-226, 2014 This paper reviews strategies for solving problems encountered when analyzing large genomic data sets and describes the implementation of those strategies in R by packages from the Bioconductor project. We treat the scalable processing, summarization and visualization of big genomic data.
arxiv +1 more source
Draft Genome Sequence of Multidrug-Resistant Abortive Campylobacter jejuni from Northern California. [PDF]
, 2017 Campylobacter jejuni is an enteric bacterium that can cause abortion in livestock. This is the release of a multidrug-resistant Campylobacter jejuni genome from an isolate that caused an abortion in a cow in northern California.
Clothier, Kristin A +4 more
core +2 more sources
Blockchain for Genomics: A Systematic Literature Review [PDF]
, 2021 Human genomic data carry unique information about an individual and offer unprecedented opportunities for healthcare. The clinical interpretations derived from large genomic datasets can greatly improve healthcare and pave the way for personalized medicine.
arxiv +1 more source
Copy number variant analysis from exome data in 349 patients with epileptic encephalopathy
, 2015 Infantile spasms (IS) and Lennox–Gastaut syndrome (LGS) are epileptic encephalopathies characterized by early onset, intractable seizures, and poor developmental outcomes.
Epilepsy Phenome/Genome Project & Epi4K Consortium
core +1 more source
GenomeFingerprinter and universal genome fingerprint analysis for systematic comparative genomics [PDF]
, 2013 How to compare whole genome sequences at large scale has not been achieved via conventional methods based on pair-wisely base-to-base comparison; nevertheless, no attention was paid to handle in-one-sitting a number of genomes crossing genetic category (chromosome, plasmid, and phage) with farther divergences (much less or no homologous) over large ...
arxiv +1 more source
Buffalo Genome Projects: Current Situation and Future Perspective in Improving Breeding Programs [PDF]
arXiv, 2023 Buffaloes are farm animals that contribute to food security by providing high quality meat and milk. They can better tolerate the adverse effects of global climate change on their meat and milk production. Despite their advantages, buffaloes are heavily neglected animals with fewer studies compared to other farm animals, hence, the real potential of ...
arxiv
Draft Genome Sequences of Campylobacter jejuni Strains That Cause Abortion in Livestock. [PDF]
, 2016 Campylobacter jejuni is an intestinal bacterium that can cause abortion in livestock. This publication announces the public release of 15 Campylobacter jejuni genome sequences from isolates linked to abortion in livestock.
Clothier, Kristin A +4 more
core +2 more sources
MOSGA: Modular Open-Source Genome Annotator [PDF]
Bioinformatics 36(22-23) 2020 5514-5515, 2020 The generation of high-quality assemblies, even for large eukaryotic genomes, has become a routine task for many biologists thanks to recent advances in sequencing technologies. However, the annotation of these assemblies - a crucial step towards unlocking the biology of the organism of interest - has remained a complex challenge that often requires ...
arxiv +1 more source