Results 41 to 50 of about 1,073,692 (309)

DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis

eLife, 2013
Breast cancer genomes have revealed a novel form of mutation showers (kataegis) in which multiple same-strand substitutions at C:G pairs spaced one to several hundred nucleotides apart are clustered over kilobase-sized regions, often associated with ...
Benjamin JM Taylor, Serena Nik-Zainal, Yee Ling Wu, Lucy A Stebbings, Keiran Raine, Peter J Campbell, Cristina Rada, Michael R Stratton, Michael S Neuberger   +8 more
doaj   +1 more source

HLA-A*11:01:01:01, HLA-C*12:02:02:01-HLA-B*52:01:02:02, Age and Sex Are Associated With Severity of Japanese COVID-19 With Respiratory Failure

Frontiers in Immunology, 2021
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus causing coronavirus disease 2019 (COVID-19) was announced as an outbreak by the World Health Organization (WHO) in January 2020 and as a pandemic in March 2020.
Seik-Soon Khor, Yosuke Omae, Nao Nishida, Masaya Sugiyama, Noriko Kinoshita, Tetsuya Suzuki, Michiyo Suzuki, Satoshi Suzuki, Shinyu Izumi, Masayuki Hojo, Norio Ohmagari, Masashi Mizokami, Katsushi Tokunaga   +12 more
doaj   +1 more source

REAPR: a universal tool for genome assembly evaluation. [PDF]

, 2013
Methods to reliably assess the accuracy of genome sequence data are lacking. Currently completeness is only described qualitatively and mis-assemblies are overlooked.
Berriman, Matthew, Hunt, Martin, Kikuchi, Taisei, Newbold, Chris, Otto, Thomas D, Sanders, Mandy   +5 more
core   +2 more sources

Genomic Standards Consortium Projects [PDF]

Standards in Genomic Sciences, 2014
The Genomic Standards Consortium (GSC) is an open-membership community that was founded in 2005 to work towards the development, implementation and harmonization of standards in the field of genomics. Starting with the defined task of establishing a minimal set of descriptions the GSC has evolved into an active standards-setting body that currently has
J. Wim De Smet, Hans-Peter Klenk, Lynette Hirschman, Jack A. Gilbert, Jack A. Gilbert, Renzo Kottmann, Dawn Field, Peter Dawyndt, Gregory J Caporaso, Guy Cochrane, Linda A. Amaral-Zettler, Robert J. Robbins, Lynn M. Schriml, Folker Meyer, Folker Meyer, John Wooley, Ilene Karsch-Mizrachi, Pelin Yilmaz, Nikos C. Kyrpides, George M. Garrity, Susanna Sansone, Tatiana Tatusova, Peter Sterk, Neil M Davies, Neil M Davies, Frank Oliver Glöckner, Owen White, Norman Morrison, Dave Ussery, Inigo San Gil, James R. Cole, Rob Knight   +31 more
openaire   +7 more sources

The NBDC-DDBJ imputation server facilitates the use of controlled access reference panel datasets in Japan

Human Genome Variation, 2022
Accurate genotype imputation requires large-scale reference panel datasets. When conducting genotype imputation on the Japanese population, researchers can use such datasets under collaborative studies or controlled access conditions in public databases.
Tsuyoshi Hachiya, Manabu Ishii, Yosuke Kawai, Seik-Soon Khor, Minae Kawashima, Licht Toyo-Oka, Nobutaka Mitsuhashi, Asami Fukuda, Yuichi Kodama, Takatomo Fujisawa, Katsushi Tokunaga, Toshihisa Takagi   +11 more
doaj   +1 more source

Complete genome sequence of Kribbella flavida type strain (IFO 14399). [PDF]

, 2010
The genus Kribbella consists of 15 species, with Kribbella flavida (Park et al. 1999) as the type species. The name Kribbella was formed from the acronym of the Korea Research Institute of Bioscience and Biotechnology, KRIBB.
Brettin, Thomas, Bristow, Jim, Bruce, David, Chain, Patrick, Chang, Yun-Juan, Chen, Amy, Chen, Feng, Cheng, Jan-Fang, Copeland, Alex, Eisen, Jonathan A, Glavina Del Rio, Tijana, Goodwin, Lynne, Göker, Markus, Hauser, Loren, Hugenholtz, Philip, Ivanova, Natalia, Jeffries, Cynthia D, Klenk, Hans-Peter, Kyrpides, Nikos C, Labutti, Kurt, Land, Miriam, Lapidus, Alla, Lucas, Susan, Markowitz, Victor, Mavromatis, Konstantinos, Mikhailova, Natalia, Nolan, Matt, Palaniappan, Krishna, Pati, Amrita, Pitluck, Sam, Pukall, Rüdiger, Rohde, Manfred, Tice, Hope   +32 more
core   +1 more source

Draft Genome Sequence of Multidrug-Resistant Abortive Campylobacter jejuni from Northern California. [PDF]

, 2017
Campylobacter jejuni is an enteric bacterium that can cause abortion in livestock. This is the release of a multidrug-resistant Campylobacter jejuni genome from an isolate that caused an abortion in a cow in northern California.
Clothier, Kristin A, Huang, Bihua C, Kong, Nguyet, Weimer, Bart C, Weis, Allison M   +4 more
core   +2 more sources

Update of the Gene Discovery Program in Schistosoma mansoni with the Expressed Sequence Tag Approach

Memorias do Instituto Oswaldo Cruz, 1997
Continuing the Schistosoma mansoni Genome Project 363 new templates were sequenced generating 205 more ESTs corresponding to 91 genes. Seventy four of these genes (81%) had not previously been described in S. mansoni.
Élida ML Rabelo, Glória R Franco, Vasco AC Azevedo, Heloisa B Pena, Túlio M Santos, Wendell SF Meira, Neuza A Rodrigues, José Miguel Ortega, Sérgio DJ Pena   +8 more
doaj   +1 more source

Are we there yet? : reliably estimating the completeness of plant genome sequences [PDF]

, 2016
Genome sequencing is becoming cheaper and faster thanks to the introduction of next-generation sequencing techniques. Dozens of new plant genome sequences have been released in recent years, ranging from small to gigantic repeat-rich or polyploid genomes.
Ruttink, Tom, Vandepoele, Klaas, Veeckman, Elisabeth   +2 more
core   +3 more sources

An An accurate molecular method to sex elephants using PCR amplification of Amelogenin gene

Pachyderm, 2020
The use of molecular methods to identify the sex of elephants from non-invasive samples is essential for studies of population dynamics and population genetics.
George Lohay
doaj   +1 more source