Results 1 to 10 of about 714,798 (302)

A multiple alignment workflow shows the effect of repeat masking and parameter tuning on alignment in plants

The Plant Genome, 2022
Alignments of multiple genomes are a cornerstone of comparative genomics, but generating these alignments remains technically challenging and often impractical.
Yaoyao Wu, Lynn Johnson, Baoxing Song, Cinta Romay, Michelle Stitzer, Adam Siepel, Edward Buckler, Armin Scheben   +7 more
doaj   +1 more source

Prediction of evolutionary constraint by genomic annotations improves functional prioritization of genomic variants in maize

Genome Biology, 2022
Background Crop improvement through cross-population genomic prediction and genome editing requires identification of causal variants at high resolution, within fewer than hundreds of base pairs.
Guillaume P. Ramstein, Edward S. Buckler
doaj   +1 more source

Genome-wide imputation using the practical haplotype graph in the heterozygous crop cassava

G3: Genes, Genomes, Genetics, 2021
Genomic applications such as genomic selection and genome-wide association have become increasingly common since the advent of genome sequencing.
Evan M Long, Peter J Bradbury, M Cinta Romay, Edward S Buckler, Kelly R Robbins   +4 more
doaj   +1 more source

Whole-genome sequencing of endangered Zhoushan cattle suggests its origin and the association of MC1R with black coat colour

Scientific Reports, 2021
Zhoushan cattle are an endangered cattle breed in the Zhoushan islands in China. Since Zhoushan cattle have been bred in isolation, they show unique characteristics, such as dark black coat colour. However, no studies have been conducted on the genome of
Lihua Jiang, Tetsuo Kon, Chunyan Chen, Ryota Ichikawa, Qiyuan Zheng, Liyi Pei, Ikuyo Takemura, Lauden Hagai Nsobi, Hiromasa Tabata, Hao Pan, Yoshihiro Omori, Atsushi Ogura   +11 more
doaj   +1 more source

Extensive Genomic Diversity among Bovine-Adapted Staphylococcus aureus: Evidence for a Genomic Rearrangement within CC97 [PDF]

, 2015
peer-reviewedStaphylococcus aureus is an important pathogen associated with both human and veterinary disease and is a common cause of bovine mastitis. Genomic heterogeneity exists between S.
Budd, Kathleen E, Cormican, Paul, Keane, Orla M, McCoy, Finola, Mitchell, Jennifer, Monecke, Stefan   +5 more
core   +7 more sources

A k-mer grammar analysis to uncover maize regulatory architecture

BMC Plant Biology, 2019
Background Only a small percentage of the genome sequence is involved in regulation of gene expression, but to biochemically identify this portion is expensive and laborious.
María Katherine Mejía-Guerra, Edward S. Buckler   +1 more
doaj   +1 more source

Identification of miRNA-eQTLs in maize mature leaf by GWAS

BMC Genomics, 2020
Background MiRNAs play essential roles in plant development and response to biotic and abiotic stresses through interaction with their target genes. The expression level of miRNAs shows great variations among different plant accessions, developmental ...
Shu-Yun Chen, Mei-Hsiu Su, Karl A. Kremling, Nicholas K. Lepak, M. Cinta Romay, Qi Sun, Peter J. Bradbury, Edward S. Buckler, Hsin-Mei Ku   +8 more
doaj   +1 more source

The origin of exotic pet sugar gliders (Petaurus breviceps) kept in the United States of America [PDF]

PeerJ, 2019
The demand for exotic non-domesticated animals kept as pets in the United States of America (USA) is increasing the exportation rates of these species from their native ranges.
Catriona D. Campbell, Jill Pecon-Slattery, Rebecca Pollak, Leo Joseph, Clare E. Holleley   +4 more
doaj   +2 more sources

Data for: "Investigations into the within-host genomic diversity and phenotypic variation of Plasmodium falciparum" [PDF]

, 2017
Quantitative data produced to support a PhD thesis on the within-host genomic diversity and phenotypic variation of Plasmodium ...
Murray, Lee
core   +1 more source

Whole-genome resequencing of large yellow croaker (Larimichthys crocea) reveals the population structure and signatures of environmental adaptation

Scientific Reports, 2021
Large yellow croaker is an economically important fish in China and East Asia. Despite its economic importance, genome-wide adaptions of domesticated large yellow croaker are largely unknown.
Tetsuo Kon, Liyi Pei, Ryota Ichikawa, Chunyan Chen, Ping Wang, Ikuyo Takemura, Yingying Ye, Xiaojun Yan, Baoying Guo, Weiye Li, Hagai Nsobi Lauden, Hiromasa Tabata, Hao Pan, Yoshihiro Omori, Atsushi Ogura, Lihua Jiang   +15 more
doaj   +1 more source