Results 71 to 80 of about 70,588 (313)

Cell geometry and membrane protein crowding constrain Escherichia coli growth rate, overflow metabolism, respiration, and maintenance energy

FEBS Letters, EarlyView.
The physical dimensions and shape of bacterial cells define the surface area available to acquire nutrients and the volume available for synthesizing proteins and DNA. Here, we use computational systems biology to decode the importance of cell geometry as a major determinant of prokaryotic phenotype, including growth rate and metabolic efficiency. This
Ross P. Carlson, Tomáš Gedeon, Mauricio Garcia Benitez, Campbell Putnam, William R. Harcombe, Radhakrishnan Mahadevan, Ashley E. Beck   +6 more
wiley   +1 more source

Regular embeddings of a graph [PDF]

Pacific Journal of Mathematics, 1983
In this paper we study embeddings of a graph G in Euclidean space R" that are 'regular' in the following sense: given any two distinct vertices u and v of G, the distance between the corresponding points in R" equals a if u and v are adjacent, and equals β otherwise.
openaire   +3 more sources

Salmonella lipopolysaccharide‐containing supported lipid bilayers as platforms to study bacteriophage interactions

FEBS Letters, EarlyView.
We present robust protocols for the preparation of supported lipid bilayers (SLBs) incorporating either Salmonella smooth LPS or outer membrane vesicles (OMVs). We use a combination of quartz crystal microbalance with dissipation (QCM‐D) and fluorescence microscopy to both characterize the SLBs of various compositions and to probe their interactions ...
Hudson P. Pace, Alyssa Borges, Charles Arnaud, Tove Karlsson, Nina K. Bröker, Stefanie Barbirz, Marta Bally   +6 more
wiley   +1 more source

Spectral Geometry for Structural Pattern Recognition [PDF]

, 2010
Graphs are used pervasively in computer science as representations of data with a network or relational structure, where the graph structure provides a flexible representation such that there is no fixed dimensionality for objects. However, the analysis
El Ghawalby, Heyayda, El Ghawalby, Hewayda   +1 more
core  

Re-embedding a 1-Plane Graph into a Straight-Line Drawing in Linear Time [PDF]

, 2016
Thomassen characterized some 1-plane embedding as the forbidden configuration such that a given 1-plane embedding of a graph is drawable in straight-lines if and only if it does not contain the configuration [C. Thomassen, Rectilinear drawings of graphs,
Seok-Hee Hong, Hong, Seok-Hee, Nagomachi, Hiroshi, Hiroshi Nagamochi   +3 more
core   +1 more source

EDNRB‐dependent endothelin signaling reduces proliferation and promotes proneural‐to‐mesenchymal transition in gliomas

Molecular Oncology, EarlyView.
Glioma cells mainly express the endothelin receptor EDNRB, while EDNRA is restricted to a perivascular tumor subpopulation. Endothelin signaling reduces glioma cell proliferation while promoting migration and a proneural‐to‐mesenchymal transition associated with poor prognosis. This pathway activates Ca2+, K+, ERK, and STAT3 signalings and is regulated
Donovan Pineau, Leonor Garcia, Hugo Arnold, Antonija Hanžek, Maialen Arrieta, Laurent R Gauthier, Christine Granotier‐Beckers, François D Boussin, Amaury Herbet, Marie Hautière, Valentin Asei‐Ceschino, Clémentin Jacques, Laura Brard, Thomas Harnois, Valérie Coronas, Bruno Constantin, Aurélien Chatelier, Jean Chemin, Serge Urbach, Martial Seveno, Szimonetta Hideg, Chantal Ripoll, Kasandra Aguilar‐Cázarez, Min Zheng, Guo‐Hao Huang, Sheng‐Qing Lv, Lei Zhang, Philippe Rondard, Laurent Prezeau, Jean‐Philippe Pin, Hugues Duffau, Luc Bauchet, Valérie Rigau, Franck Denat, Charles Truillet, Didier Boquet, Jean‐Philippe Hugnot   +36 more
wiley   +1 more source

Graph Embedding in Vector Spaces Using Matching-Graphs [PDF]

, 2021
Graphs are recognized as a versatile alternative to feature vectors. That is, graphs are used in diverse applications (e.g. protein function/structure prediction, signature verification or detection of Alzheimer’s Disease).
Fuchs, Mathias, Mathias Fuchs, Riesen, Kaspar, Kaspar Riesen   +3 more
core   +1 more source

Hebbian Graph Embeddings

CoRR, 2019
Representation learning has recently been successfully used to create vector representations of entities in language learning, recommender systems and in similarity learning. Graph embeddings exploit the locality structure of a graph and generate embeddings for nodes which could be words in a language, products of a retail website; and the nodes are ...
Shalin Shah, Venkataramana B. Kini
openaire   +2 more sources

Somatic mutational landscape in von Hippel–Lindau familial hemangioblastoma

Molecular Oncology, EarlyView.
The causes of central nervous system (CNS) hemangioblastoma in Von Hippel–Lindau (vHL) disease are unclear. We used Whole Exome Sequencing (WES) on familial hemangioblastoma to investigate events that underlie tumor development. Our findings suggest that VHL loss creates a permissive environment for tumor formation, while additional alterations ...
Maja Dembic, Anne Nørremølle, Lilian Bomme Ousager, Lars van Brakel Andersen, Marie Louise Mølgaard Binderup, Mads Thomassen   +5 more
wiley   +1 more source

Embedding graphs in surfaces

Journal of Combinatorial Theory, Series B, 1984
AbstractThe basic topological facts about closed curves in R2 and triangulability of surfaces are used to prove the folk theorem that any surface embedding of a graph is combinatorial. A basic technical lemma for this proof (a version of what it means to apply scissors to an embedded graph) is then used to give a rigourous definition of the ...
Peter Hoffman, R. Bruce Richter
openaire   +2 more sources